May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
PHOU - PSTA
UniProt: P0A9K7 - P07654
Length: 537
Sequences: 1107
Seq/Len: 2.26
I_Prob: 0.02
PHOU - Phosphate-specific transport system accessory protein PhoU
Paralog alert: 0.54 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: PHOU 		PSTA - Phosphate transport system permease protein PstA
Paralog alert: 0.97 [within 20: 0.79] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfG:FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
114_L 97_G 1.17 0.02
82_T 86_S 1.02 0.02
132_G 89_L 1.01 0.01
199_I 113_R 0.97 0.01
108_K 134_I 0.95 0.01
107_D 87_G 0.92 0.01
103_G 176_L 0.90 0.01
67_A 39_A 0.87 0.01
62_N 216_L 0.86 0.01
39_A 221_I 0.84 0.01
150_D 288_V 0.84 0.01
96_I 135_V 0.83 0.01
166_Q 292_K 0.83 0.01
44_H 100_L 0.80 0.01
56_E 100_L 0.80 0.01
213_I 117_L 0.79 0.01
105_V 198_I 0.79 0.01
42_A 42_L 0.77 0.01
150_D 52_T 0.76 0.01
128_L 106_I 0.75 0.01
219_G 185_E 0.75 0.01
24_Q 117_L 0.75 0.01
156_R 288_V 0.75 0.01
31_M 57_I 0.74 0.01
70_E 277_L 0.74 0.01
133_R 259_S 0.74 0.01
213_I 67_E 0.73 0.01
49_D 117_L 0.73 0.01
137_Q 87_G 0.72 0.01
45_N 277_L 0.72 0.01
52_K 117_L 0.72 0.01
47_D 148_M 0.72 0.01
144_D 186_A 0.71 0.01
150_D 46_I 0.71 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4744 seconds.