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OPENSEQ.org

RNG - YHDE
UniProt: P0A9J0 - P25536
Length: 686
Sequences: 455
Seq/Len: 0.68
I_Prob: 0.01

RNG - Ribonuclease G
Paralog alert: 0.51 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNG
YHDE - Maf-like protein YhdE
Paralog alert: 0.44 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YCEF YHDE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
7_V 149_A 1.58 0.01
7_V 79_V 1.56 0.01
141_V 20_L 1.48 0.01
196_V 66_V 1.41 0.00
414_V 11_P 1.34 0.00
37_I 41_A 1.34 0.00
392_R 39_E 1.32 0.00
97_V 41_A 1.25 0.00
260_Y 175_L 1.22 0.00
365_E 55_A 1.19 0.00
266_I 68_G 1.18 0.00
48_R 47_R 1.18 0.00
156_K 149_A 1.18 0.00
97_V 4_L 1.18 0.00
392_R 47_R 1.16 0.00
73_I 149_A 1.16 0.00
60_I 163_I 1.16 0.00
1_M 149_A 1.16 0.00
295_D 175_L 1.16 0.00
18_Y 41_A 1.14 0.00
486_V 149_A 1.13 0.00
233_V 99_Q 1.13 0.00
295_D 81_E 1.12 0.00
108_V 122_T 1.10 0.00
176_G 68_G 1.10 0.00
212_E 186_N 1.09 0.00
381_S 29_T 1.08 0.00
103_L 163_I 1.08 0.00
471_V 31_I 1.07 0.00
460_L 100_T 1.07 0.00
292_L 130_T 1.05 0.00
48_R 39_E 1.05 0.00
437_S 68_G 1.04 0.00
66_A 62_K 1.04 0.00
58_V 72_I 1.02 0.00
144_R 171_V 1.02 0.00
187_A 130_T 1.01 0.00
379_G 182_L 1.01 0.00
441_L 138_V 1.00 0.00
16_V 109_L 1.00 0.00
124_T 44_Y 0.99 0.00
471_V 41_A 0.98 0.00
113_G 175_L 0.97 0.00
170_I 102_Q 0.97 0.00
292_L 41_A 0.96 0.00
380_F 44_Y 0.95 0.00
141_V 87_E 0.95 0.00
331_I 165_G 0.94 0.00
257_L 156_G 0.93 0.00
282_R 143_P 0.92 0.00
413_T 89_A 0.92 0.00
300_M 24_F 0.92 0.00
244_E 66_V 0.92 0.00
434_A 171_V 0.92 0.00
411_R 5_Y 0.91 0.00
237_L 165_G 0.91 0.00
446_P 144_L 0.91 0.00
471_V 87_E 0.91 0.00
396_S 47_R 0.91 0.00
437_S 66_V 0.91 0.00
272_V 135_A 0.90 0.00
127_S 138_V 0.90 0.00
20_D 126_F 0.90 0.00
318_D 100_T 0.90 0.00
392_R 51_E 0.90 0.00
156_K 130_T 0.90 0.00
399_H 156_G 0.89 0.00
256_K 26_R 0.89 0.00
183_A 170_V 0.89 0.00
239_Y 107_V 0.89 0.00
424_I 76_N 0.88 0.00
250_I 106_A 0.88 0.00
165_Q 66_V 0.88 0.00
309_A 177_E 0.88 0.00
95_E 31_I 0.88 0.00
200_K 100_T 0.88 0.00
310_F 156_G 0.87 0.00
267_F 175_L 0.87 0.00
97_V 58_A 0.86 0.00
103_L 113_Q 0.86 0.00
219_V 77_G 0.86 0.00
265_P 166_S 0.86 0.00
396_S 45_V 0.86 0.00
111_P 157_G 0.86 0.00
176_G 49_A 0.85 0.00
220_L 67_L 0.85 0.00
48_R 177_E 0.85 0.00
132_F 26_R 0.85 0.00
132_F 14_Q 0.85 0.00
357_R 107_V 0.84 0.00
182_L 181_L 0.84 0.00
139_V 150_Y 0.84 0.00
117_A 157_G 0.84 0.00
15_R 16_L 0.84 0.00
325_I 51_E 0.84 0.00
236_R 20_L 0.83 0.00
144_R 35_R 0.83 0.00
277_Q 145_D 0.83 0.00
447_A 80_L 0.83 0.00
425_M 106_A 0.83 0.00
239_Y 187_A 0.83 0.00
144_R 108_A 0.82 0.00
67_F 174_P 0.82 0.00
270_F 187_A 0.82 0.00
303_V 66_V 0.82 0.00
208_Q 89_A 0.82 0.00
388_M 80_L 0.82 0.00
148_E 184_N 0.82 0.00
412_G 143_P 0.82 0.00
426_R 47_R 0.82 0.00
484_F 25_E 0.81 0.00
146_E 68_G 0.81 0.00
155_K 42_Q 0.81 0.00
104_M 158_C 0.81 0.00
256_K 133_D 0.81 0.00
346_I 106_A 0.81 0.00
141_V 23_T 0.81 0.00
44_G 7_A 0.81 0.00
468_G 87_E 0.81 0.00
31_R 165_G 0.81 0.00
141_V 150_Y 0.81 0.00
460_L 104_M 0.80 0.00
249_Y 79_V 0.80 0.00
14_T 65_P 0.80 0.00
364_L 41_A 0.80 0.00
283_K 62_K 0.80 0.00
234_D 107_V 0.80 0.00
233_V 112_S 0.80 0.00
107_V 49_A 0.80 0.00
247_S 85_D 0.80 0.00
355_D 151_G 0.80 0.00
10_T 39_E 0.80 0.00
237_L 66_V 0.79 0.00
380_F 157_G 0.79 0.00
435_Y 169_A 0.79 0.00
461_A 40_S 0.79 0.00
10_T 47_R 0.78 0.00
101_Q 98_G 0.78 0.00
334_Q 17_L 0.78 0.00
234_D 119_L 0.78 0.00
108_V 155_L 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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