May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

EPMA - RFH
UniProt: P0A8N7 - P28369
Length: 491
Sequences: 294
Seq/Len: 0.63
I_Prob: 0.00

EPMA - Elongation factor P--(R)-beta-lysine ligase
Paralog alert: 0.93 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: EPMA SYD SYK1 SYK2 SYN
RFH - Putative peptide chain release factor homolog
Paralog alert: 0.91 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RFH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
308_A 132_Q 1.33 0.00
316_E 116_K 1.31 0.00
137_Q 116_K 1.28 0.00
22_I 100_S 1.23 0.00
158_E 18_V 1.21 0.00
194_L 153_N 1.21 0.00
154_L 26_W 1.18 0.00
322_V 48_H 1.14 0.00
29_F 117_R 1.11 0.00
12_S 68_S 1.08 0.00
238_V 162_A 1.06 0.00
69_M 90_D 1.05 0.00
22_I 137_A 1.03 0.00
167_T 88_K 1.03 0.00
29_F 26_W 1.03 0.00
54_V 100_S 1.02 0.00
199_G 26_W 1.02 0.00
291_M 55_L 1.01 0.00
140_D 138_L 1.00 0.00
313_T 57_I 1.00 0.00
318_I 55_L 0.99 0.00
36_L 48_H 0.97 0.00
322_V 75_T 0.97 0.00
289_V 75_T 0.97 0.00
72_W 90_D 0.96 0.00
115_L 136_A 0.96 0.00
125_Y 93_V 0.96 0.00
147_L 64_E 0.95 0.00
228_E 138_L 0.95 0.00
146_S 120_R 0.95 0.00
146_S 116_K 0.95 0.00
143_A 20_L 0.94 0.00
260_Q 86_V 0.94 0.00
182_A 117_R 0.93 0.00
318_I 26_W 0.91 0.00
193_Q 108_S 0.91 0.00
30_F 19_S 0.91 0.00
313_T 60_F 0.90 0.00
71_L 162_A 0.90 0.00
54_V 142_R 0.89 0.00
138_V 73_Y 0.89 0.00
264_Q 130_Q 0.88 0.00
15_N 73_Y 0.87 0.00
183_D 48_H 0.87 0.00
36_L 162_A 0.86 0.00
183_D 57_I 0.86 0.00
159_I 86_V 0.85 0.00
115_L 76_L 0.84 0.00
147_L 63_D 0.84 0.00
308_A 73_Y 0.84 0.00
194_L 86_V 0.83 0.00
25_E 48_H 0.83 0.00
32_D 124_A 0.82 0.00
212_V 95_A 0.82 0.00
274_L 63_D 0.82 0.00
310_G 135_S 0.82 0.00
106_R 48_H 0.82 0.00
322_V 90_D 0.82 0.00
149_Y 2_L 0.82 0.00
119_R 118_L 0.81 0.00
256_R 100_S 0.80 0.00
12_S 126_K 0.80 0.00
177_D 2_L 0.80 0.00
313_T 75_T 0.79 0.00
30_F 134_N 0.79 0.00
186_E 126_K 0.79 0.00
268_K 60_F 0.79 0.00
312_E 3_E 0.79 0.00
18_K 100_S 0.79 0.00
212_V 140_S 0.78 0.00
138_V 90_D 0.78 0.00
283_L 56_G 0.78 0.00
106_R 60_F 0.78 0.00
295_S 122_L 0.77 0.00
311_A 63_D 0.77 0.00
140_D 69_D 0.77 0.00
173_A 125_W 0.77 0.00
156_Y 90_D 0.76 0.00
238_V 20_L 0.76 0.00
155_R 124_A 0.76 0.00
121_H 95_A 0.76 0.00
140_D 65_Q 0.76 0.00
167_T 63_D 0.75 0.00
304_L 104_V 0.75 0.00
115_L 141_Q 0.75 0.00
131_V 116_K 0.75 0.00
309_L 8_R 0.75 0.00
29_F 78_S 0.75 0.00
195_L 19_S 0.75 0.00
14_P 26_W 0.74 0.00
167_T 145_F 0.74 0.00
183_D 6_T 0.74 0.00
174_A 100_S 0.74 0.00
126_R 28_L 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 3.2457 seconds.