May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
RUVB - YEBC
UniProt: P0A812 - P0A8A0
Length: 582
Sequences: 417
Seq/Len: 0.72
I_Prob: 0.00
RUVB - Holliday junction ATP-dependent DNA helicase RuvB
Paralog alert: 0.13 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RUVB 		YEBC - Probable transcriptional regulatory protein YebC
Paralog alert: 0.23 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YEBC YEEN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
118_L 117_F 1.36 0.00
84_R 86_I 1.36 0.00
276_F 54_D 1.33 0.00
181_L 70_I 1.29 0.00
183_F 12_H 1.26 0.00
128_P 50_R 1.25 0.00
94_A 102_L 1.24 0.00
245_D 206_A 1.23 0.00
90_V 110_V 1.21 0.00
149_K 110_V 1.20 0.00
60_I 57_L 1.19 0.00
311_L 224_E 1.15 0.00
193_V 27_K 1.15 0.00
304_Y 123_N 1.13 0.00
16_E 99_I 1.12 0.00
52_G 37_K 1.11 0.00
323_R 171_D 1.11 0.00
40_Q 15_A 1.11 0.00
23_I 62_T 1.11 0.00
153_P 20_K 1.11 0.00
93_K 126_T 1.10 0.00
53_D 10_T 1.09 0.00
26_K 131_A 1.09 0.00
284_D 31_E 1.08 0.00
135_L 221_D 1.07 0.00
18_V 208_M 1.07 0.00
183_F 162_V 1.07 0.00
310_F 181_K 1.07 0.00
228_R 29_I 1.06 0.00
23_I 57_L 1.06 0.00
158_I 178_E 1.06 0.00
164_A 112_E 1.05 0.00
233_F 93_G 1.05 0.00
331_T 124_L 1.04 0.00
330_I 80_A 1.03 0.00
286_L 30_R 1.02 0.00
238_H 217_M 1.01 0.00
48_A 89_G 1.01 0.00
320_A 241_E 1.00 0.00
79_M 63_R 1.00 0.00
147_S 234_H 1.00 0.00
325_W 70_I 1.00 0.00
91_L 82_M 0.98 0.00
291_G 102_L 0.98 0.00
85_T 100_E 0.98 0.00
319_M 220_I 0.98 0.00
286_L 155_L 0.98 0.00
84_R 102_L 0.97 0.00
291_G 106_R 0.97 0.00
84_R 148_D 0.97 0.00
22_A 207_D 0.97 0.00
212_V 191_L 0.96 0.00
53_D 78_D 0.96 0.00
158_I 67_N 0.95 0.00
228_R 101_C 0.95 0.00
83_L 15_A 0.95 0.00
311_L 204_T 0.94 0.00
153_P 182_V 0.94 0.00
84_R 100_E 0.94 0.00
54_A 153_A 0.94 0.00
249_Q 224_E 0.93 0.00
133_Y 27_K 0.93 0.00
60_I 62_T 0.93 0.00
22_A 221_D 0.93 0.00
30_E 202_P 0.93 0.00
188_D 218_R 0.93 0.00
206_D 206_A 0.92 0.00
202_L 32_L 0.92 0.00
130_M 170_I 0.92 0.00
311_L 232_V 0.91 0.00
106_P 172_V 0.91 0.00
133_Y 30_R 0.91 0.00
134_Q 29_I 0.90 0.00
141_E 63_R 0.90 0.00
329_G 79_D 0.90 0.00
187_P 118_S 0.90 0.00
328_F 44_D 0.90 0.00
53_D 117_F 0.90 0.00
79_M 43_P 0.89 0.00
75_V 244_A 0.89 0.00
295_E 202_P 0.89 0.00
125_V 17_Q 0.89 0.00
141_E 193_A 0.89 0.00
84_R 101_C 0.88 0.00
208_G 51_A 0.88 0.00
92_E 22_G 0.88 0.00
202_L 220_I 0.88 0.00
238_H 44_D 0.88 0.00
75_V 115_H 0.87 0.00
141_E 142_F 0.87 0.00
90_V 61_M 0.87 0.00
256_V 224_E 0.87 0.00
74_I 215_K 0.87 0.00
304_Y 238_I 0.87 0.00
304_Y 160_E 0.86 0.00
143_P 240_D 0.86 0.00
91_L 141_S 0.86 0.00
177_I 168_G 0.86 0.00
15_P 139_V 0.86 0.00
60_I 65_T 0.86 0.00
83_L 11_R 0.85 0.00
20_D 71_A 0.85 0.00
148_I 72_R 0.85 0.00
84_R 98_M 0.85 0.00
41_M 62_T 0.85 0.00
26_K 15_A 0.85 0.00
304_Y 191_L 0.85 0.00
177_I 33_V 0.85 0.00
290_I 174_T 0.85 0.00
323_R 218_R 0.85 0.00
284_D 119_K 0.85 0.00
204_M 152_E 0.85 0.00
266_R 8_A 0.85 0.00
327_H 97_I 0.84 0.00
202_L 148_D 0.84 0.00
38_R 209_D 0.84 0.00
125_V 79_D 0.84 0.00
199_F 92_P 0.84 0.00
272_V 61_M 0.84 0.00
23_I 65_T 0.84 0.00
22_A 27_K 0.84 0.00
118_L 124_L 0.84 0.00
214_R 64_D 0.84 0.00
261_F 62_T 0.84 0.00
54_A 166_D 0.83 0.00
29_E 97_I 0.83 0.00
323_R 91_G 0.83 0.00
125_V 9_N 0.83 0.00
90_V 142_F 0.83 0.00
239_D 172_V 0.83 0.00
45_I 33_V 0.83 0.00
241_T 188_A 0.83 0.00
153_P 240_D 0.83 0.00
100_M 123_N 0.83 0.00
264_M 55_K 0.83 0.00
297_I 80_A 0.82 0.00
208_G 48_R 0.82 0.00
105_E 117_F 0.82 0.00
290_I 13_R 0.82 0.00
267_K 215_K 0.82 0.00
326_N 93_G 0.82 0.00
283_L 106_R 0.82 0.00
310_F 19_A 0.82 0.00
16_E 242_V 0.82 0.00
45_I 219_L 0.82 0.00
299_D 151_M 0.81 0.00
286_L 29_I 0.81 0.00
306_I 48_R 0.81 0.00
154_P 222_M 0.81 0.00
60_I 171_D 0.81 0.00
250_A 129_S 0.80 0.00
284_D 127_D 0.80 0.00
304_Y 168_G 0.80 0.00
102_T 26_T 0.80 0.00
328_F 225_D 0.80 0.00
75_V 22_G 0.80 0.00
253_M 72_R 0.80 0.00
267_K 173_Y 0.80 0.00
54_A 124_L 0.80 0.00
44_F 119_K 0.80 0.00
201_G 148_D 0.80 0.00
214_R 30_R 0.80 0.00
258_A 176_W 0.80 0.00
139_I 168_G 0.80 0.00
103_N 67_N 0.80 0.00
304_Y 124_L 0.79 0.00
39_S 218_R 0.79 0.00
326_N 44_D 0.79 0.00
326_N 160_E 0.79 0.00
182_E 221_D 0.79 0.00
179_Q 26_T 0.79 0.00
173_D 115_H 0.79 0.00
41_M 57_L 0.79 0.00
49_K 143_E 0.79 0.00
200_M 118_S 0.78 0.00
166_S 123_N 0.78 0.00
254_L 9_N 0.78 0.00
83_L 78_D 0.78 0.00
228_R 30_R 0.78 0.00
71_L 27_K 0.78 0.00
143_P 79_D 0.78 0.00
49_K 86_I 0.78 0.00
310_F 23_K 0.78 0.00
141_E 61_M 0.78 0.00
49_K 201_I 0.78 0.00
216_A 206_A 0.78 0.00
283_L 204_T 0.78 0.00
253_M 24_I 0.78 0.00
244_A 83_E 0.78 0.00
321_T 22_G 0.78 0.00
3_E 32_L 0.77 0.00
93_K 150_I 0.77 0.00
234_A 34_T 0.77 0.00
139_I 136_K 0.77 0.00
276_F 216_L 0.77 0.00
288_A 89_G 0.77 0.00
325_W 198_V 0.77 0.00
30_E 112_E 0.77 0.00
120_P 63_R 0.77 0.00
60_I 63_R 0.76 0.00
271_A 234_H 0.76 0.00
150_I 200_M 0.76 0.00
29_E 67_N 0.76 0.00
166_S 137_K 0.76 0.00
52_G 181_K 0.76 0.00
224_N 55_K 0.76 0.00
218_G 114_R 0.76 0.00
311_L 226_C 0.76 0.00
8_I 156_E 0.76 0.00
323_R 151_M 0.76 0.00
296_T 75_G 0.75 0.00
247_A 220_I 0.75 0.00
84_R 42_D 0.75 0.00
267_K 9_N 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2671 seconds.