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OPENSEQ.org

RPOA - RS14
UniProt: P0A7Z4 - P0AG59
Length: 430
Sequences: 340
Seq/Len: 0.80
I_Prob: 0.16

RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
RS14 - 30S ribosomal protein S14
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS14
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
88_L 18_D 1.79 0.16
146_V 7_K 1.57 0.09
142_M 5_S 1.43 0.06
177_Y 30_I 1.39 0.06
165_E 55_S 1.36 0.05
208_N 37_S 1.26 0.04
192_V 77_F 1.23 0.03
175_A 66_Q 1.18 0.03
297_K 71_H 1.17 0.03
180_V 54_D 1.15 0.03
130_I 20_Y 1.15 0.03
291_K 66_Q 1.15 0.03
232_V 73_F 1.14 0.02
272_A 10_E 1.13 0.02
123_I 43_N 1.12 0.02
184_A 54_D 1.11 0.02
289_L 6_M 1.10 0.02
7_E 71_H 1.10 0.02
115_I 16_L 1.09 0.02
232_V 71_H 1.09 0.02
98_V 84_V 1.09 0.02
221_A 70_P 1.08 0.02
196_T 77_F 1.08 0.02
137_N 29_A 1.08 0.02
295_L 89_M 1.06 0.02
200_K 30_I 1.06 0.02
8_F 55_S 1.06 0.02
131_C 75_R 1.05 0.02
213_P 53_R 1.05 0.02
2_Q 8_A 1.04 0.02
25_K 15_A 1.04 0.02
115_I 55_S 1.04 0.02
27_T 55_S 1.04 0.02
88_L 54_D 1.04 0.02
282_V 80_S 1.03 0.02
182_R 88_A 1.03 0.02
177_Y 12_K 1.03 0.02
14_V 6_M 1.03 0.02
307_L 39_E 1.03 0.02
222_T 97_K 1.02 0.02
286_E 76_K 1.02 0.02
144_I 16_L 1.02 0.02
131_C 17_A 1.01 0.01
135_D 84_V 1.00 0.01
72_E 86_E 1.00 0.01
299_S 98_K 0.99 0.01
70_T 99_A 0.99 0.01
127_Q 56_S 0.99 0.01
107_I 66_Q 0.99 0.01
123_I 58_S 0.98 0.01
319_E 30_I 0.98 0.01
259_D 99_A 0.98 0.01
46_I 29_A 0.98 0.01
188_E 61_R 0.97 0.01
203_I 31_I 0.97 0.01
212_D 58_S 0.97 0.01
282_V 45_V 0.96 0.01
220_A 99_A 0.96 0.01
204_E 73_F 0.96 0.01
164_D 97_K 0.96 0.01
150_R 49_Q 0.95 0.01
15_D 36_A 0.95 0.01
131_C 74_L 0.94 0.01
59_V 55_S 0.93 0.01
88_L 31_I 0.93 0.01
140_I 66_Q 0.93 0.01
102_L 14_V 0.93 0.01
310_R 58_S 0.93 0.01
188_E 71_H 0.93 0.01
29_E 51_L 0.92 0.01
223_I 66_Q 0.92 0.01
168_I 14_V 0.92 0.01
155_A 30_I 0.92 0.01
189_A 84_V 0.92 0.01
202_V 26_E 0.92 0.01
31_L 74_L 0.92 0.01
156_S 77_F 0.92 0.01
97_E 25_A 0.92 0.01
244_E 31_I 0.90 0.01
206_E 76_K 0.90 0.01
247_P 93_I 0.90 0.01
241_E 56_S 0.90 0.01
92_V 97_K 0.90 0.01
109_P 25_A 0.90 0.01
248_E 53_R 0.90 0.01
57_T 51_L 0.90 0.01
181_E 50_T 0.90 0.01
212_D 4_Q 0.90 0.01
193_E 10_E 0.89 0.01
316_M 51_L 0.89 0.01
190_A 76_K 0.89 0.01
205_M 71_H 0.89 0.01
35_F 42_W 0.88 0.01
56_V 54_D 0.88 0.01
241_E 26_E 0.87 0.01
140_I 23_K 0.87 0.01
166_R 84_V 0.87 0.01
230_A 56_S 0.87 0.01
218_R 49_Q 0.87 0.01
77_D 91_G 0.87 0.01
119_G 82_I 0.87 0.01
88_L 65_R 0.87 0.01
90_V 72_G 0.87 0.01
138_A 25_A 0.87 0.01
327_A 36_A 0.86 0.01
16_I 7_K 0.86 0.01
311_G 55_S 0.86 0.01
57_T 62_N 0.86 0.01
107_I 74_L 0.86 0.01
224_L 58_S 0.86 0.01
274_A 54_D 0.86 0.01
236_D 82_I 0.86 0.01
113_A 86_E 0.85 0.01
186_N 9_R 0.85 0.01
126_P 26_E 0.85 0.01
117_H 12_K 0.85 0.01
291_K 10_E 0.85 0.01
81_I 20_Y 0.85 0.01
296_G 98_K 0.85 0.01
153_V 80_S 0.85 0.01
118_D 40_D 0.85 0.01
259_D 50_T 0.85 0.01
309_S 93_I 0.85 0.01
121_V 55_S 0.84 0.01
79_L 45_V 0.84 0.01
181_E 93_I 0.84 0.01
122_E 15_A 0.84 0.01
90_V 84_V 0.84 0.01
261_E 84_V 0.84 0.01
234_L 78_G 0.84 0.01
211_I 61_R 0.84 0.01
94_G 15_A 0.84 0.01
177_Y 26_E 0.84 0.01
222_T 71_H 0.83 0.01
297_K 87_A 0.83 0.01
182_R 79_L 0.83 0.01
273_E 84_V 0.83 0.01
124_V 77_F 0.83 0.01
13_L 16_L 0.83 0.01
42_A 66_Q 0.83 0.01
58_E 37_S 0.82 0.01
165_E 38_D 0.82 0.01
7_E 66_Q 0.82 0.01
282_V 77_F 0.82 0.01
153_V 46_L 0.82 0.01
147_Q 89_M 0.82 0.01
217_I 80_S 0.82 0.01
225_A 93_I 0.82 0.01
39_L 44_A 0.82 0.01
155_A 54_D 0.81 0.01
32_E 81_R 0.81 0.01
263_T 89_M 0.81 0.01
143_R 54_D 0.81 0.01
287_V 54_D 0.81 0.01
202_V 72_G 0.81 0.01
204_E 9_R 0.81 0.01
147_Q 55_S 0.81 0.01
202_V 6_M 0.81 0.01
283_Q 89_M 0.81 0.01
146_V 80_S 0.81 0.01
85_L 12_K 0.81 0.01
245_E 19_K 0.80 0.01
211_I 21_F 0.80 0.01
327_A 20_Y 0.80 0.01
211_I 43_N 0.80 0.01
220_A 24_R 0.80 0.01
75_Q 50_T 0.80 0.01
70_T 28_K 0.80 0.01
118_D 4_Q 0.80 0.01
46_I 14_V 0.80 0.01
266_S 54_D 0.79 0.01
120_D 29_A 0.79 0.01
142_M 29_A 0.79 0.01
271_K 15_A 0.79 0.01
278_I 81_R 0.79 0.01
158_R 54_D 0.79 0.01
180_V 36_A 0.79 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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