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OPENSEQ.org

RPOA - RS4
UniProt: P0A7Z4 - P0A7V8
Length: 535
Sequences: 604
Seq/Len: 1.14
I_Prob: 0.00

RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
RS4 - 30S ribosomal protein S4
Paralog alert: 0.09 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: RS4
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
301_T 10_K 1.24 0.00
8_F 150_K 1.18 0.00
185_Y 64_I 1.12 0.00
131_C 150_K 1.12 0.00
253_L 206_K 1.11 0.00
234_L 113_E 1.10 0.00
123_I 143_V 1.09 0.00
108_G 75_Y 1.07 0.00
180_V 176_G 1.06 0.00
90_V 62_R 1.06 0.00
112_A 135_Y 1.03 0.00
189_A 62_R 1.01 0.00
187_V 53_V 1.00 0.00
127_Q 139_P 1.00 0.00
207_T 143_V 0.99 0.00
181_E 82_L 0.99 0.00
197_D 62_R 0.98 0.00
269_C 2_A 0.98 0.00
277_Y 103_Y 0.98 0.00
310_R 47_R 0.98 0.00
226_E 168_P 0.98 0.00
129_V 123_I 0.98 0.00
80_E 141_D 0.98 0.00
31_L 100_N 0.96 0.00
108_G 14_R 0.95 0.00
80_E 126_N 0.94 0.00
178_S 198_H 0.94 0.00
177_Y 83_K 0.94 0.00
275_I 168_P 0.93 0.00
181_E 148_K 0.92 0.00
181_E 174_D 0.92 0.00
313_S 131_N 0.91 0.00
107_I 45_K 0.90 0.00
178_S 75_Y 0.89 0.00
111_T 73_R 0.89 0.00
121_V 19_L 0.89 0.00
222_T 200_I 0.89 0.00
239_Q 198_H 0.89 0.00
71_K 169_T 0.88 0.00
17_E 92_A 0.88 0.00
132_H 121_K 0.88 0.00
54_C 10_K 0.87 0.00
82_L 36_Q 0.87 0.00
110_V 182_F 0.87 0.00
204_E 77_K 0.86 0.00
272_A 50_D 0.86 0.00
156_S 140_N 0.85 0.00
282_V 206_K 0.85 0.00
135_D 70_R 0.85 0.00
3_G 114_A 0.83 0.00
278_I 195_I 0.83 0.00
275_I 185_K 0.83 0.00
257_V 75_Y 0.83 0.00
189_A 113_E 0.83 0.00
177_Y 82_L 0.83 0.00
200_K 96_G 0.83 0.00
212_D 88_E 0.83 0.00
164_D 146_R 0.82 0.00
216_A 81_R 0.82 0.00
307_L 94_L 0.82 0.00
172_L 45_K 0.82 0.00
102_L 196_N 0.81 0.00
7_E 126_N 0.81 0.00
197_D 145_I 0.81 0.00
189_A 140_N 0.81 0.00
31_L 25_V 0.81 0.00
236_D 200_I 0.81 0.00
123_I 103_Y 0.80 0.00
46_I 121_K 0.80 0.00
180_V 112_A 0.80 0.00
233_D 206_K 0.80 0.00
91_R 7_P 0.80 0.00
97_E 155_V 0.80 0.00
211_I 70_R 0.80 0.00
139_S 103_Y 0.79 0.00
186_N 177_K 0.79 0.00
171_L 194_D 0.79 0.00
208_N 48_L 0.79 0.00
21_S 135_Y 0.79 0.00
183_I 140_N 0.79 0.00
310_R 70_R 0.78 0.00
216_A 8_K 0.78 0.00
189_A 129_V 0.78 0.00
280_D 61_V 0.78 0.00
280_D 17_T 0.78 0.00
132_H 175_A 0.78 0.00
7_E 37_A 0.77 0.00
59_V 175_A 0.77 0.00
104_K 105_M 0.77 0.00
69_S 52_G 0.77 0.00
133_L 168_P 0.77 0.00
43_L 103_Y 0.76 0.00
177_Y 93_L 0.76 0.00
259_D 135_Y 0.76 0.00
80_E 80_A 0.76 0.00
156_S 74_N 0.76 0.00
132_H 70_R 0.76 0.00
275_I 94_L 0.76 0.00
209_G 195_I 0.76 0.00
295_L 154_R 0.76 0.00
155_A 136_Q 0.75 0.00
311_G 78_E 0.75 0.00
123_I 36_Q 0.75 0.00
205_M 109_A 0.75 0.00
237_V 10_K 0.74 0.00
221_A 201_V 0.74 0.00
140_I 124_M 0.74 0.00
189_A 133_A 0.74 0.00
217_I 159_L 0.74 0.00
131_C 43_A 0.74 0.00
194_Q 131_N 0.74 0.00
154_P 119_S 0.74 0.00
152_Y 91_L 0.74 0.00
317_R 45_K 0.74 0.00
35_F 157_A 0.74 0.00
228_L 25_V 0.73 0.00
69_S 142_V 0.73 0.00
13_L 198_H 0.73 0.00
180_V 200_I 0.73 0.00
327_A 138_S 0.73 0.00
297_K 113_E 0.73 0.00
35_F 72_F 0.73 0.00
50_S 72_F 0.73 0.00
116_T 169_T 0.73 0.00
200_K 91_L 0.73 0.00
220_A 146_R 0.73 0.00
181_E 92_A 0.73 0.00
253_L 113_E 0.73 0.00
22_T 82_L 0.72 0.00
25_K 64_I 0.72 0.00
136_E 195_I 0.72 0.00
18_Q 52_G 0.72 0.00
164_D 76_Y 0.72 0.00
327_A 80_A 0.72 0.00
91_R 151_K 0.72 0.00
217_I 168_P 0.72 0.00
127_Q 177_K 0.72 0.00
242_V 198_H 0.71 0.00
80_E 169_T 0.71 0.00
279_G 39_G 0.71 0.00
200_K 203_L 0.71 0.00
63_G 50_D 0.71 0.00
266_S 37_A 0.71 0.00
182_R 196_N 0.71 0.00
258_D 5_L 0.71 0.00
173_V 185_K 0.71 0.00
123_I 93_L 0.71 0.00
94_G 132_I 0.70 0.00
266_S 76_Y 0.70 0.00
42_A 32_C 0.70 0.00
51_M 47_R 0.70 0.00
60_E 100_N 0.70 0.00
309_S 131_N 0.70 0.00
220_A 143_V 0.70 0.00
23_H 156_K 0.70 0.00
162_E 196_N 0.70 0.00
298_K 54_Q 0.70 0.00
220_A 96_G 0.70 0.00
244_E 124_M 0.70 0.00
90_V 50_D 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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