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OPENSEQ.org
RNPA - YIDZ
UniProt: P0A7Y8 - P31463
Length: 438
Sequences: 251
Seq/Len: 0.61
I_Prob: 0.00
RNPA - Ribonuclease P protein component
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNPA 		YIDZ - HTH-type transcriptional regulator YidZ
Paralog alert: 0.88 [within 20: 0.49] - ratio of genomes with paralogs
Cluster includes: AAER ABGR ALLS CBL CYNR CYSB DMLR DSDC GCVA HCAR HDFR ICIA ILVY LEUO LRHA LYSR METR NAC NHAR OXYR PERR TDCA TTDR XAPR YAFC YAHB YBDO YBEF YBHD YCAN YCJZ YDCI YDHB YEEY YEIE YFER YFIE YGFI YHAJ YHJC YIAU YIDZ YJIE YNEJ YNFL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_A 245_A 1.08 0.00
12_L 237_E 1.08 0.00
33_I 51_D 0.98 0.00
54_K 198_D 0.97 0.00
101_L 244_M 0.92 0.00
101_L 22_E 0.91 0.00
79_E 118_Q 0.91 0.00
86_V 13_L 0.88 0.00
66_K 19_L 0.88 0.00
17_Q 154_E 0.87 0.00
97_D 21_Q 0.83 0.00
93_V 115_L 0.82 0.00
86_V 142_T 0.82 0.00
101_L 192_H 0.81 0.00
87_V 58_S 0.81 0.00
13_L 19_L 0.81 0.00
54_K 306_W 0.80 0.00
56_V 76_A 0.80 0.00
54_K 173_E 0.80 0.00
60_H 51_D 0.79 0.00
34_T 8_L 0.78 0.00
57_R 277_P 0.78 0.00
47_I 80_Q 0.78 0.00
95_D 104_E 0.78 0.00
43_G 231_I 0.78 0.00
82_A 69_V 0.78 0.00
51_V 182_V 0.77 0.00
86_V 174_V 0.77 0.00
90_K 14_L 0.77 0.00
51_V 76_A 0.76 0.00
88_V 154_E 0.76 0.00
97_D 106_P 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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