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OPENSEQ.org

RNPA - YBCJ
UniProt: P0A7Y8 - P0AAS7
Length: 189
Sequences: 208
Seq/Len: 1.20
I_Prob: 0.02

RNPA - Ribonuclease P protein component
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNPA
YBCJ - Uncharacterized protein YbcJ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBCJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_P 26_S 1.41 0.02
45_P 34_I 1.26 0.01
59_A 28_A 1.23 0.01
23_Q 55_A 1.17 0.01
63_N 9_H 1.14 0.01
12_L 68_V 1.08 0.01
81_P 62_A 1.06 0.01
95_D 59_V 1.06 0.01
56_V 61_F 1.05 0.01
19_T 54_V 1.05 0.01
80_L 59_V 1.04 0.01
46_R 48_R 1.04 0.01
63_N 17_L 1.03 0.01
80_L 43_G 0.99 0.01
77_Q 39_V 0.99 0.01
100_A 51_C 0.99 0.01
15_P 42_D 0.97 0.01
29_G 16_D 0.97 0.01
50_T 48_R 0.96 0.01
103_E 26_S 0.96 0.01
66_K 33_A 0.94 0.01
66_K 28_A 0.94 0.01
18_F 30_A 0.93 0.00
110_R 63_G 0.93 0.00
87_V 15_C 0.93 0.00
19_T 24_S 0.92 0.00
108_L 67_Q 0.92 0.00
106_E 45_V 0.91 0.00
52_A 50_R 0.91 0.00
11_R 34_I 0.91 0.00
63_N 33_A 0.90 0.00
38_R 10_P 0.90 0.00
29_G 15_C 0.90 0.00
12_L 30_A 0.89 0.00
108_L 62_A 0.89 0.00
34_T 16_D 0.89 0.00
66_K 61_F 0.89 0.00
80_L 40_K 0.89 0.00
60_H 35_A 0.88 0.00
94_A 5_S 0.87 0.00
21_V 54_V 0.87 0.00
93_V 42_D 0.85 0.00
85_F 25_E 0.85 0.00
58_R 50_R 0.84 0.00
63_N 28_A 0.84 0.00
75_L 34_I 0.84 0.00
65_I 46_E 0.83 0.00
18_F 39_V 0.83 0.00
82_A 26_S 0.83 0.00
70_R 15_C 0.83 0.00
84_D 46_E 0.82 0.00
6_F 59_V 0.82 0.00
29_G 48_R 0.81 0.00
97_D 60_S 0.81 0.00
20_F 43_G 0.81 0.00
88_V 28_A 0.80 0.00
84_D 14_L 0.80 0.00
16_S 62_A 0.80 0.00
21_V 6_L 0.80 0.00
104_A 37_G 0.79 0.00
86_V 47_T 0.79 0.00
102_S 21_E 0.79 0.00
35_I 8_K 0.78 0.00
105_L 11_H 0.78 0.00
84_D 41_V 0.78 0.00
65_I 4_F 0.77 0.00
88_V 2_A 0.77 0.00
18_F 50_R 0.77 0.00
72_S 59_V 0.77 0.00
23_Q 36_E 0.77 0.00
50_T 53_I 0.77 0.00
81_P 10_P 0.77 0.00
70_R 16_D 0.77 0.00
29_G 49_K 0.77 0.00
82_A 41_V 0.76 0.00
12_L 46_E 0.76 0.00
49_L 12_V 0.76 0.00
36_L 16_D 0.76 0.00
45_P 28_A 0.76 0.00
78_H 59_V 0.76 0.00
93_V 22_G 0.76 0.00
24_Q 3_T 0.75 0.00
14_T 41_V 0.75 0.00
110_R 45_V 0.75 0.00
49_L 13_E 0.75 0.00
86_V 5_S 0.74 0.00
49_L 16_D 0.74 0.00
38_R 6_L 0.74 0.00
83_M 45_V 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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