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OPENSEQ.org

RIMM - SRP54
UniProt: P0A7X6 - P0AGD7
Length: 635
Sequences: 772
Seq/Len: 1.25
I_Prob: 0.00

RIMM - Ribosome maturation factor RimM
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIMM
SRP54 - Signal recognition particle protein
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SRP54
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
177_D 370_D 1.29 0.00
110_D 151_L 1.12 0.00
88_N 62_H 1.04 0.00
26_R 139_V 1.02 0.00
87_T 173_N 1.01 0.00
105_D 105_M 0.97 0.00
103_E 413_V 0.97 0.00
17_G 248_T 0.95 0.00
116_V 197_V 0.95 0.00
136_N 86_M 0.92 0.00
100_Q 413_V 0.91 0.00
85_L 103_V 0.91 0.00
12_D 350_L 0.90 0.00
164_I 302_S 0.89 0.00
16_L 373_L 0.87 0.00
21_S 104_L 0.86 0.00
34_S 354_L 0.86 0.00
109_K 399_K 0.85 0.00
176_V 432_K 0.85 0.00
124_L 434_G 0.83 0.00
110_D 237_N 0.83 0.00
78_D 313_R 0.83 0.00
115_Q 315_Q 0.83 0.00
124_L 330_D 0.82 0.00
105_D 131_K 0.82 0.00
85_L 139_V 0.80 0.00
176_V 180_K 0.80 0.00
68_Q 358_G 0.80 0.00
176_V 393_I 0.80 0.00
131_M 410_V 0.80 0.00
118_T 351_M 0.80 0.00
158_F 30_T 0.79 0.00
117_V 354_L 0.79 0.00
126_K 135_V 0.79 0.00
17_G 50_E 0.79 0.00
59_Q 412_D 0.79 0.00
124_L 422_D 0.79 0.00
105_D 172_V 0.79 0.00
61_E 302_S 0.78 0.00
25_I 80_N 0.78 0.00
71_I 283_E 0.78 0.00
161_G 393_I 0.78 0.00
133_T 399_K 0.78 0.00
26_R 319_L 0.78 0.00
21_S 4_N 0.78 0.00
70_M 29_D 0.77 0.00
135_S 19_R 0.77 0.00
72_I 121_G 0.77 0.00
72_I 132_V 0.77 0.00
57_Q 315_Q 0.77 0.00
23_Y 347_M 0.77 0.00
140_V 301_L 0.76 0.00
33_S 250_V 0.76 0.00
105_D 198_D 0.76 0.00
126_K 318_K 0.76 0.00
57_Q 350_L 0.76 0.00
36_E 187_L 0.75 0.00
180_P 118_G 0.75 0.00
78_D 400_R 0.75 0.00
129_D 302_S 0.75 0.00
97_Q 117_V 0.75 0.00
93_V 197_V 0.75 0.00
139_L 8_R 0.74 0.00
19_M 44_A 0.74 0.00
18_K 217_T 0.74 0.00
14_I 95_L 0.74 0.00
84_N 341_M 0.74 0.00
156_V 93_L 0.74 0.00
74_L 104_L 0.74 0.00
126_K 375_R 0.74 0.00
133_T 308_E 0.74 0.00
87_T 351_M 0.74 0.00
138_V 411_Q 0.74 0.00
137_D 186_V 0.73 0.00
114_C 16_I 0.73 0.00
100_Q 23_T 0.73 0.00
124_L 6_T 0.73 0.00
155_L 23_T 0.73 0.00
83_A 177_K 0.73 0.00
178_W 74_F 0.73 0.00
39_E 197_V 0.72 0.00
158_F 46_P 0.72 0.00
169_L 300_V 0.72 0.00
130_M 187_L 0.72 0.00
176_V 16_I 0.72 0.00
134_G 274_G 0.72 0.00
16_L 263_R 0.72 0.00
156_V 123_F 0.72 0.00
174_I 18_G 0.72 0.00
44_Y 136_S 0.72 0.00
153_E 302_S 0.71 0.00
25_I 33_E 0.71 0.00
83_A 111_A 0.71 0.00
141_I 424_Q 0.71 0.00
174_I 380_I 0.71 0.00
30_R 49_R 0.70 0.00
175_E 354_L 0.70 0.00
38_A 361_P 0.70 0.00
67_N 219_F 0.70 0.00
171_T 125_R 0.70 0.00
21_S 346_G 0.70 0.00
110_D 122_K 0.70 0.00
25_I 392_E 0.70 0.00
42_F 201_M 0.70 0.00
92_V 394_I 0.70 0.00
156_V 135_V 0.70 0.00
22_S 352_G 0.69 0.00
158_F 45_L 0.69 0.00
50_Q 55_V 0.69 0.00
124_L 429_K 0.69 0.00
41_I 65_N 0.69 0.00
105_D 40_E 0.69 0.00
81_D 292_S 0.69 0.00
84_N 291_A 0.69 0.00
14_I 254_A 0.69 0.00
174_I 340_Q 0.69 0.00
106_Y 404_A 0.69 0.00
22_S 69_T 0.69 0.00
22_S 163_D 0.69 0.00
114_C 176_L 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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