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OPENSEQ.org

RL28 - SLMA
UniProt: P0A7M2 - P0C093
Length: 276
Sequences: 175
Seq/Len: 0.66
I_Prob: 0.00

RL28 - 50S ribosomal protein L28
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL28
SLMA - Nucleoid occlusion factor SlmA
Paralog alert: 0.84 [within 20: 0.25] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
18_R 158_L 1.54 0.00
51_V 177_E 1.49 0.00
52_S 170_L 1.17 0.00
65_D 188_A 1.16 0.00
53_A 172_R 1.16 0.00
65_D 21_L 1.16 0.00
18_R 143_K 1.11 0.00
23_N 36_K 1.11 0.00
52_S 177_E 1.10 0.00
51_V 84_T 1.06 0.00
76_E 70_L 1.05 0.00
71_L 171_S 1.05 0.00
18_R 151_Y 1.05 0.00
53_A 18_S 1.05 0.00
71_L 39_A 1.04 0.00
18_R 150_G 1.04 0.00
51_V 165_F 1.03 0.00
24_A 155_E 1.01 0.00
18_R 155_E 1.00 0.00
50_R 52_F 1.00 0.00
21_A 105_L 1.00 0.00
14_T 149_E 1.00 0.00
70_E 180_Y 0.99 0.00
3_R 25_S 0.97 0.00
59_I 35_A 0.97 0.00
22_L 144_R 0.95 0.00
34_H 82_K 0.94 0.00
53_A 137_R 0.94 0.00
24_A 151_Y 0.94 0.00
24_A 158_L 0.94 0.00
3_R 184_D 0.93 0.00
26_K 89_R 0.92 0.00
26_K 34_T 0.92 0.00
77_K 76_L 0.92 0.00
70_E 85_T 0.91 0.00
34_H 91_I 0.91 0.00
33_L 52_F 0.90 0.00
35_S 145_M 0.88 0.00
52_S 165_F 0.88 0.00
66_T 170_L 0.87 0.00
24_A 143_K 0.87 0.00
48_T 196_Q 0.86 0.00
21_A 150_G 0.86 0.00
23_N 105_L 0.86 0.00
3_R 167_E 0.86 0.00
24_A 10_N 0.86 0.00
71_L 76_L 0.86 0.00
48_T 68_D 0.85 0.00
55_G 38_A 0.84 0.00
48_T 183_T 0.84 0.00
44_K 153_T 0.84 0.00
48_T 195_A 0.84 0.00
10_K 54_S 0.84 0.00
24_A 144_R 0.83 0.00
51_V 150_G 0.83 0.00
2_S 142_E 0.82 0.00
21_A 151_Y 0.82 0.00
22_L 118_Q 0.82 0.00
52_S 166_C 0.81 0.00
42_S 188_A 0.81 0.00
74_R 101_R 0.81 0.00
53_A 165_F 0.81 0.00
73_A 184_D 0.81 0.00
13_V 21_L 0.80 0.00
78_Y 119_D 0.80 0.00
34_H 127_Q 0.80 0.00
51_V 93_L 0.80 0.00
74_R 36_K 0.80 0.00
53_A 134_A 0.80 0.00
2_S 194_A 0.79 0.00
18_R 115_M 0.79 0.00
28_R 43_V 0.79 0.00
71_L 26_S 0.79 0.00
70_E 83_D 0.79 0.00
17_N 12_R 0.78 0.00
26_K 26_S 0.78 0.00
68_L 91_I 0.77 0.00
48_T 110_T 0.77 0.00
57_R 32_I 0.77 0.00
66_T 56_T 0.77 0.00
3_R 177_E 0.77 0.00
77_K 197_L 0.76 0.00
18_R 89_R 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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