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OPENSEQ.org

RL11 - SECE
UniProt: P0A7J7 - P0AG96
Length: 269
Sequences: 222
Seq/Len: 0.83
I_Prob: 0.01

RL11 - 50S ribosomal protein L11
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL11
SECE - Preprotein translocase subunit SecE
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
70_V 43_L 1.53 0.01
51_K 123_T 1.45 0.01
117_M 126_R 1.40 0.01
135_S 86_T 1.32 0.01
41_A 87_R 1.25 0.01
118_T 90_T 1.22 0.00
47_D 101_T 1.19 0.00
132_T 29_A 1.17 0.00
58_V 102_A 1.16 0.00
118_T 59_A 1.13 0.00
5_V 105_S 1.11 0.00
70_V 47_A 1.10 0.00
125_M 18_K 1.09 0.00
65_R 100_V 1.07 0.00
17_M 88_Q 1.07 0.00
140_V 29_A 1.06 0.00
5_V 48_V 1.05 0.00
139_V 123_T 1.02 0.00
142_D 111_L 1.02 0.00
111_Q 107_I 1.01 0.00
55_I 11_G 1.00 0.00
92_K 49_V 1.00 0.00
100_K 61_L 1.00 0.00
127_R 55_A 0.99 0.00
114_A 48_V 0.99 0.00
108_E 118_L 0.99 0.00
65_R 1_M 0.98 0.00
24_V 80_R 0.98 0.00
71_T 76_R 0.98 0.00
51_K 100_V 0.98 0.00
51_K 116_V 0.97 0.00
132_T 98_A 0.96 0.00
71_T 74_E 0.96 0.00
49_I 76_R 0.95 0.00
45_K 90_T 0.94 0.00
33_V 76_R 0.94 0.00
92_K 64_K 0.93 0.00
32_G 94_T 0.93 0.00
17_M 101_T 0.93 0.00
93_P 91_L 0.92 0.00
5_V 50_I 0.92 0.00
125_M 117_R 0.92 0.00
65_R 36_Y 0.91 0.00
111_Q 30_I 0.90 0.00
110_A 48_V 0.90 0.00
8_Y 125_L 0.89 0.00
63_A 2_S 0.89 0.00
100_K 123_T 0.88 0.00
80_L 51_L 0.88 0.00
70_V 66_K 0.88 0.00
51_K 71_F 0.87 0.00
135_S 46_L 0.87 0.00
5_V 113_G 0.87 0.00
95_K 36_Y 0.86 0.00
122_I 119_V 0.86 0.00
61_V 14_L 0.86 0.00
118_T 55_A 0.86 0.00
73_T 27_L 0.85 0.00
8_Y 7_A 0.85 0.00
110_A 75_A 0.85 0.00
88_S 86_T 0.84 0.00
55_I 24_A 0.84 0.00
37_E 108_L 0.83 0.00
70_V 122_I 0.83 0.00
81_K 97_V 0.83 0.00
70_V 61_L 0.83 0.00
84_A 70_A 0.83 0.00
104_A 118_L 0.83 0.00
80_L 88_Q 0.82 0.00
127_R 22_V 0.82 0.00
61_V 93_T 0.82 0.00
16_G 97_V 0.82 0.00
65_R 76_R 0.82 0.00
100_K 72_A 0.81 0.00
95_K 81_K 0.81 0.00
81_K 123_T 0.80 0.00
8_Y 100_V 0.80 0.00
24_V 88_Q 0.79 0.00
91_G 92_H 0.79 0.00
9_V 83_I 0.79 0.00
13_V 118_L 0.79 0.00
77_A 58_V 0.79 0.00
132_T 20_V 0.79 0.00
62_Y 62_T 0.79 0.00
123_E 93_T 0.78 0.00
81_K 116_V 0.78 0.00
49_I 40_M 0.78 0.00
112_T 122_I 0.78 0.00
86_I 61_L 0.78 0.00
118_T 75_A 0.78 0.00
94_N 76_R 0.77 0.00
138_L 121_F 0.77 0.00
49_I 70_A 0.77 0.00
95_K 94_T 0.77 0.00
135_S 75_A 0.77 0.00
45_K 95_L 0.77 0.00
86_I 58_V 0.77 0.00
139_V 24_A 0.77 0.00
122_I 23_V 0.76 0.00
112_T 110_G 0.76 0.00
31_Q 88_Q 0.76 0.00
118_T 48_V 0.76 0.00
5_V 80_R 0.76 0.00
122_I 49_V 0.76 0.00
111_Q 75_A 0.76 0.00
7_A 51_L 0.76 0.00
86_I 50_I 0.76 0.00
108_E 117_R 0.76 0.00
7_A 120_S 0.76 0.00
129_I 44_R 0.76 0.00
115_A 40_M 0.75 0.00
114_A 109_W 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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