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OPENSEQ.org

RECF - YBCJ
UniProt: P0A7H0 - P0AAS7
Length: 427
Sequences: 306
Seq/Len: 0.72
I_Prob: 0.00

RECF - DNA replication and repair protein RecF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECF
YBCJ - Uncharacterized protein YbcJ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBCJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
284_A 61_F 1.30 0.00
83_I 46_E 1.23 0.00
124_L 54_V 1.22 0.00
125_L 63_G 1.20 0.00
331_A 13_E 1.16 0.00
42_A 59_V 1.16 0.00
335_E 44_A 1.15 0.00
331_A 28_A 1.14 0.00
57_I 42_D 1.12 0.00
305_A 35_A 1.10 0.00
197_A 43_G 1.08 0.00
6_L 64_H 1.08 0.00
177_W 13_E 1.05 0.00
268_T 26_S 1.05 0.00
27_F 9_H 1.05 0.00
188_I 5_S 1.04 0.00
11_F 21_E 1.03 0.00
227_E 4_F 1.02 0.00
42_A 66_V 1.02 0.00
108_L 13_E 1.02 0.00
139_G 16_D 1.01 0.00
56_Q 13_E 1.01 0.00
33_G 49_K 1.01 0.00
228_T 10_P 1.00 0.00
118_T 24_S 1.00 0.00
299_Y 53_I 1.00 0.00
137_D 8_K 1.00 0.00
43_I 55_A 1.00 0.00
278_M 16_D 1.00 0.00
294_G 45_V 1.00 0.00
57_I 57_Q 0.99 0.00
23_P 22_G 0.98 0.00
76_G 60_S 0.98 0.00
182_I 59_V 0.98 0.00
46_L 13_E 0.97 0.00
94_K 10_P 0.97 0.00
118_T 34_I 0.97 0.00
136_L 63_G 0.97 0.00
108_L 34_I 0.96 0.00
268_T 4_F 0.96 0.00
350_V 51_C 0.95 0.00
27_F 54_V 0.95 0.00
76_G 10_P 0.95 0.00
25_F 6_L 0.95 0.00
274_L 53_I 0.93 0.00
278_M 15_C 0.93 0.00
313_R 50_R 0.92 0.00
102_G 34_I 0.91 0.00
16_T 63_G 0.91 0.00
127_G 34_I 0.91 0.00
98_D 50_R 0.91 0.00
109_A 46_E 0.91 0.00
286_G 16_D 0.90 0.00
70_L 58_T 0.90 0.00
101_D 16_D 0.90 0.00
285_Q 16_D 0.90 0.00
58_G 59_V 0.89 0.00
3_L 28_A 0.89 0.00
109_A 13_E 0.89 0.00
286_G 48_R 0.89 0.00
317_A 59_V 0.89 0.00
43_I 51_C 0.88 0.00
140_C 22_G 0.88 0.00
341_S 17_L 0.88 0.00
185_A 39_V 0.87 0.00
355_I 38_Q 0.87 0.00
226_K 10_P 0.87 0.00
161_R 53_I 0.86 0.00
264_P 59_V 0.86 0.00
121_G 26_S 0.86 0.00
264_P 66_V 0.86 0.00
115_Q 54_V 0.85 0.00
33_G 31_K 0.85 0.00
280_A 16_D 0.85 0.00
49_G 15_C 0.85 0.00
127_G 13_E 0.85 0.00
227_E 33_A 0.84 0.00
46_L 11_H 0.84 0.00
243_Q 8_K 0.84 0.00
164_A 13_E 0.83 0.00
266_E 15_C 0.83 0.00
188_I 45_V 0.83 0.00
2_S 51_C 0.83 0.00
116_L 26_S 0.83 0.00
313_R 49_K 0.82 0.00
108_L 48_R 0.82 0.00
276_L 16_D 0.82 0.00
351_E 36_E 0.82 0.00
148_F 15_C 0.81 0.00
62_R 25_E 0.81 0.00
230_Y 65_S 0.81 0.00
281_L 20_L 0.81 0.00
146_G 55_A 0.81 0.00
12_R 30_A 0.81 0.00
107_E 4_F 0.80 0.00
296_R 11_H 0.80 0.00
181_L 19_K 0.80 0.00
44_Y 40_K 0.79 0.00
274_L 30_A 0.79 0.00
336_H 6_L 0.79 0.00
83_I 40_K 0.79 0.00
150_A 33_A 0.79 0.00
267_D 4_F 0.79 0.00
140_C 61_F 0.79 0.00
63_H 51_C 0.79 0.00
216_L 1_M 0.78 0.00
38_S 42_D 0.78 0.00
276_L 15_C 0.78 0.00
189_S 26_S 0.78 0.00
59_R 44_A 0.78 0.00
106_A 68_V 0.78 0.00
150_A 62_A 0.78 0.00
298_L 5_S 0.78 0.00
267_D 25_E 0.78 0.00
217_T 11_H 0.78 0.00
104_K 26_S 0.78 0.00
223_G 18_L 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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