May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PYRH - RRF
UniProt: P0A7E9 - P0A805
Length: 426
Sequences: 1071
Seq/Len: 2.55
I_Prob: 0.01

PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
RRF - Ribosome-recycling factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RRF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
86_M 33_S 1.03 0.01
51_V 57_V 0.97 0.01
192_V 38_D 0.96 0.01
86_M 19_A 0.88 0.00
160_V 62_S 0.87 0.00
86_M 76_P 0.86 0.00
208_A 78_V 0.85 0.00
240_T 52_R 0.83 0.00
158_A 75_S 0.81 0.00
195_K 49_T 0.81 0.00
49_I 125_R 0.80 0.00
24_T 40_I 0.79 0.00
160_V 57_V 0.79 0.00
216_R 67_I 0.78 0.00
93_D 86_D 0.77 0.00
193_L 24_I 0.77 0.00
106_S 41_V 0.77 0.00
106_S 26_K 0.77 0.00
13_L 51_L 0.77 0.00
20_A 125_R 0.76 0.00
9_Y 40_I 0.76 0.00
150_C 99_R 0.74 0.00
210_D 67_I 0.74 0.00
235_E 125_R 0.74 0.00
239_I 150_E 0.74 0.00
230_V 166_A 0.74 0.00
172_T 43_E 0.73 0.00
118_S 181_E 0.72 0.00
182_T 145_D 0.72 0.00
164_A 86_D 0.72 0.00
25_E 89_L 0.72 0.00
205_F 29_T 0.72 0.00
228_R 154_R 0.71 0.00
234_K 76_P 0.71 0.00
51_V 142_L 0.70 0.00
13_L 64_T 0.70 0.00
150_C 10_E 0.70 0.00
239_I 169_K 0.70 0.00
221_N 100_V 0.70 0.00
22_Q 62_S 0.69 0.00
52_G 101_P 0.69 0.00
221_N 64_T 0.69 0.00
60_L 104_P 0.69 0.00
112_G 114_T 0.68 0.00
230_V 163_L 0.68 0.00
186_Q 7_K 0.68 0.00
14_L 183_M 0.68 0.00
182_T 14_D 0.68 0.00
48_G 85_S 0.68 0.00
105_M 105_L 0.67 0.00
55_I 41_V 0.67 0.00
57_G 148_I 0.67 0.00
166_K 70_F 0.67 0.00
205_F 38_D 0.66 0.00
121_E 128_V 0.66 0.00
194_E 149_S 0.66 0.00
224_G 105_L 0.66 0.00
83_A 68_N 0.65 0.00
20_A 164_T 0.65 0.00
235_E 3_S 0.65 0.00
199_V 40_I 0.65 0.00
96_H 171_I 0.65 0.00
133_I 23_Q 0.65 0.00
151_L 165_D 0.65 0.00
194_E 6_R 0.65 0.00
106_S 176_A 0.64 0.00
10_K 180_A 0.64 0.00
165_T 104_P 0.64 0.00
53_V 21_K 0.64 0.00
179_P 160_V 0.64 0.00
21_L 140_K 0.64 0.00
205_F 117_V 0.64 0.00
193_L 4_D 0.63 0.00
147_S 126_V 0.63 0.00
40_E 162_K 0.63 0.00
184_Y 74_M 0.63 0.00
228_R 148_I 0.62 0.00
163_K 104_P 0.62 0.00
13_L 62_S 0.62 0.00
52_G 140_K 0.62 0.00
34_L 6_R 0.62 0.00
129_N 70_F 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.3863 seconds.