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OPENSEQ.org

PYRB - PYRD
UniProt: P0A786 - P0A7E1
Length: 647
Sequences: 407
Seq/Len: 0.70
I_Prob: 0.00

PYRB - Aspartate carbamoyltransferase catalytic chain
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: OTC1 OTC2 PYRB YGEW
PYRD - Dihydroorotate dehydrogenase (quinone)
Paralog alert: 0.39 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PYRD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
213_H 242_V 1.23 0.00
221_A 315_V 1.05 0.00
158_V 242_V 1.04 0.00
215_S 298_I 1.03 0.00
260_A 47_V 1.03 0.00
154_D 298_I 1.03 0.00
17_S 271_L 1.01 0.00
158_V 81_S 0.99 0.00
159_A 290_L 0.98 0.00
88_T 313_S 0.98 0.00
125_V 241_G 0.97 0.00
13_I 317_I 0.95 0.00
126_L 331_E 0.94 0.00
265_L 292_I 0.92 0.00
185_F 315_V 0.91 0.00
11_I 298_I 0.91 0.00
25_L 307_K 0.90 0.00
16_L 276_T 0.89 0.00
10_I 68_G 0.89 0.00
282_P 160_E 0.89 0.00
260_A 195_T 0.88 0.00
10_I 300_S 0.88 0.00
17_S 334_T 0.87 0.00
125_V 129_K 0.87 0.00
16_L 292_I 0.86 0.00
159_A 308_I 0.86 0.00
101_D 305_R 0.85 0.00
93_I 243_I 0.85 0.00
121_G 242_V 0.85 0.00
45_I 153_D 0.84 0.00
152_R 254_V 0.84 0.00
20_D 301_V 0.84 0.00
119_F 331_E 0.82 0.00
274_I 214_I 0.82 0.00
241_Y 140_I 0.82 0.00
210_W 336_I 0.81 0.00
275_A 292_I 0.81 0.00
191_D 290_L 0.81 0.00
96_I 81_S 0.81 0.00
151_G 156_L 0.80 0.00
25_L 298_I 0.80 0.00
23_L 125_E 0.80 0.00
255_L 134_G 0.79 0.00
229_T 168_Y 0.79 0.00
139_T 276_T 0.79 0.00
165_K 331_E 0.79 0.00
103_I 74_L 0.78 0.00
79_N 271_L 0.78 0.00
248_F 53_T 0.78 0.00
154_D 160_E 0.78 0.00
265_L 230_V 0.78 0.00
264_V 308_I 0.78 0.00
177_L 292_I 0.78 0.00
260_A 276_T 0.77 0.00
137_T 68_G 0.77 0.00
104_V 143_N 0.77 0.00
228_M 260_C 0.77 0.00
104_V 92_Q 0.77 0.00
292_N 264_G 0.77 0.00
225_I 275_S 0.77 0.00
102_A 305_R 0.76 0.00
240_E 241_G 0.76 0.00
11_I 266_L 0.76 0.00
88_T 236_R 0.76 0.00
144_F 283_S 0.75 0.00
253_S 319_S 0.75 0.00
284_A 235_V 0.75 0.00
220_M 328_L 0.75 0.00
233_K 140_I 0.75 0.00
11_I 78_G 0.74 0.00
28_A 299_D 0.74 0.00
96_I 143_N 0.74 0.00
180_F 54_F 0.74 0.00
82_L 153_D 0.74 0.00
250_L 182_R 0.74 0.00
250_L 326_P 0.74 0.00
102_A 127_V 0.74 0.00
265_L 143_N 0.73 0.00
279_D 50_M 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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