May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NUSB - THIL
UniProt: P0A780 - P0AGG0
Length: 464
Sequences: 395
Seq/Len: 0.86
I_Prob: 0.00

NUSB - N utilization substance protein B
Paralog alert: 0.76 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: NUSB
THIL - Thiamine-monophosphate kinase
Paralog alert: 0.79 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: HYPE SELD THIL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
19_S 263_E 1.33 0.00
80_V 65_A 1.25 0.00
116_A 158_T 1.21 0.00
33_Q 65_A 1.15 0.00
42_D 312_V 1.11 0.00
123_V 60_D 1.11 0.00
123_V 139_P 1.09 0.00
22_L 175_L 1.06 0.00
110_L 100_L 1.01 0.00
44_D 55_F 1.00 0.00
66_M 237_A 1.00 0.00
95_R 190_H 1.00 0.00
77_L 230_C 0.99 0.00
14_V 167_G 0.97 0.00
80_V 64_L 0.97 0.00
105_N 223_H 0.95 0.00
119_S 167_G 0.94 0.00
55_V 66_Y 0.94 0.00
86_R 53_N 0.94 0.00
62_L 68_A 0.94 0.00
107_A 67_K 0.93 0.00
80_V 244_A 0.93 0.00
81_E 70_A 0.92 0.00
85_L 169_A 0.92 0.00
134_I 115_D 0.92 0.00
20_W 267_L 0.92 0.00
126_V 186_L 0.92 0.00
82_K 72_N 0.91 0.00
52_L 227_A 0.90 0.00
136_P 274_L 0.90 0.00
70_L 264_D 0.90 0.00
48_F 210_A 0.90 0.00
43_V 66_Y 0.90 0.00
77_L 205_D 0.89 0.00
82_K 59_I 0.89 0.00
16_A 192_R 0.89 0.00
126_V 237_A 0.89 0.00
24_Q 69_L 0.89 0.00
77_L 315_D 0.89 0.00
25_N 119_I 0.87 0.00
90_Y 96_D 0.87 0.00
80_V 314_L 0.87 0.00
17_L 296_M 0.87 0.00
57_T 313_T 0.87 0.00
48_F 126_G 0.86 0.00
110_L 45_S 0.86 0.00
8_R 268_C 0.85 0.00
74_L 130_M 0.85 0.00
29_D 286_L 0.83 0.00
47_Y 79_M 0.83 0.00
56_A 271_V 0.83 0.00
84_V 71_V 0.83 0.00
119_S 16_V 0.82 0.00
119_S 190_H 0.82 0.00
78_G 48_T 0.81 0.00
107_A 190_H 0.81 0.00
17_L 186_L 0.81 0.00
69_Y 68_A 0.81 0.00
86_R 189_R 0.81 0.00
77_L 179_D 0.81 0.00
118_D 41_T 0.81 0.00
108_I 222_G 0.80 0.00
93_S 11_R 0.80 0.00
130_A 36_I 0.80 0.00
77_L 189_R 0.80 0.00
111_A 43_A 0.80 0.00
66_M 298_A 0.80 0.00
80_V 264_D 0.79 0.00
92_L 71_V 0.79 0.00
70_L 42_L 0.79 0.00
46_L 155_I 0.79 0.00
82_K 187_I 0.78 0.00
68_P 210_A 0.78 0.00
44_D 223_H 0.78 0.00
67_K 44_I 0.78 0.00
62_L 8_L 0.78 0.00
13_A 158_T 0.78 0.00
120_H 28_G 0.78 0.00
88_A 170_I 0.77 0.00
103_A 225_V 0.77 0.00
112_K 89_A 0.77 0.00
31_E 254_A 0.77 0.00
24_Q 229_D 0.76 0.00
58_N 178_A 0.76 0.00
97_D 242_S 0.76 0.00
132_P 166_A 0.76 0.00
28_A 86_L 0.76 0.00
92_L 193_P 0.76 0.00
105_N 6_F 0.76 0.00
77_L 125_R 0.76 0.00
77_L 200_G 0.75 0.00
85_L 33_L 0.75 0.00
123_V 141_G 0.75 0.00
14_V 133_G 0.75 0.00
88_A 27_I 0.75 0.00
88_A 7_S 0.75 0.00
29_D 170_I 0.75 0.00
20_W 79_M 0.75 0.00
116_A 156_Y 0.75 0.00
38_Q 192_R 0.75 0.00
89_L 316_W 0.75 0.00
66_M 291_T 0.74 0.00
98_V 76_L 0.74 0.00
118_D 13_F 0.74 0.00
33_Q 110_L 0.74 0.00
136_P 308_D 0.74 0.00
70_L 76_L 0.74 0.00
129_K 8_L 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.9014 seconds.