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OPENSEQ.org

NADD - RLMH
UniProt: P0A752 - P0A8I8
Length: 368
Sequences: 346
Seq/Len: 0.94
I_Prob: 0.00

NADD - Nicotinate-nucleotide adenylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NADD
RLMH - Ribosomal RNA large subunit methyltransferase H
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RLMH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_L 8_V 1.30 0.00
85_T 143_A 1.21 0.00
87_Q 136_V 1.20 0.00
106_I 32_P 1.14 0.00
18_G 131_L 1.09 0.00
115_P 27_F 1.08 0.00
57_K 77_K 1.07 0.00
27_A 132_V 1.06 0.00
37_I 74_I 1.05 0.00
93_R 110_P 1.04 0.00
128_H 19_G 1.02 0.00
104_F 42_K 1.02 0.00
44_P 121_S 1.01 0.00
97_G 93_L 1.01 0.00
38_I 70_V 1.01 0.00
126_N 77_K 1.00 0.00
189_Q 21_T 0.99 0.00
131_V 80_D 0.99 0.00
195_E 17_Q 0.98 0.00
8_F 102_I 0.97 0.00
136_G 95_G 0.97 0.00
60_L 64_A 0.96 0.00
72_L 75_P 0.96 0.00
13_D 62_A 0.96 0.00
204_T 77_K 0.96 0.00
45_H 61_L 0.95 0.00
26_L 73_D 0.94 0.00
24_E 2_K 0.94 0.00
31_G 70_V 0.93 0.00
76_E 108_L 0.93 0.00
6_A 50_K 0.93 0.00
132_C 140_L 0.92 0.00
85_T 91_W 0.91 0.00
58_H 99_S 0.90 0.00
167_G 12_M 0.90 0.00
105_I 105_P 0.90 0.00
168_K 85_A 0.90 0.00
187_R 68_R 0.89 0.00
22_P 74_I 0.88 0.00
104_F 40_A 0.88 0.00
40_N 112_C 0.88 0.00
38_I 94_D 0.88 0.00
130_I 57_G 0.87 0.00
40_N 75_P 0.87 0.00
60_L 6_V 0.87 0.00
184_I 5_L 0.87 0.00
8_F 144_W 0.87 0.00
182_T 88_L 0.87 0.00
6_A 74_I 0.87 0.00
192_E 38_I 0.87 0.00
92_W 134_V 0.86 0.00
111_L 143_A 0.86 0.00
85_T 146_I 0.85 0.00
22_P 29_K 0.85 0.00
81_A 155_E 0.85 0.00
63_A 64_A 0.85 0.00
182_T 33_F 0.85 0.00
73_D 81_T 0.84 0.00
128_H 16_V 0.84 0.00
99_D 79_W 0.84 0.00
52_N 8_V 0.84 0.00
184_I 141_Y 0.84 0.00
120_Y 154_R 0.84 0.00
171_L 54_D 0.83 0.00
61_E 95_G 0.83 0.00
187_R 140_L 0.83 0.00
6_A 29_K 0.83 0.00
32_L 73_D 0.82 0.00
179_I 108_L 0.82 0.00
90_K 59_Q 0.82 0.00
41_N 106_E 0.82 0.00
67_K 85_A 0.82 0.00
104_F 139_S 0.81 0.00
69_L 2_K 0.81 0.00
22_P 81_T 0.81 0.00
65_A 90_R 0.80 0.00
83_S 122_L 0.80 0.00
7_L 145_S 0.80 0.00
178_N 146_I 0.80 0.00
35_V 85_A 0.80 0.00
171_L 14_D 0.79 0.00
129_L 21_T 0.79 0.00
208_Q 110_P 0.79 0.00
108_Q 65_G 0.79 0.00
71_T 101_L 0.79 0.00
46_R 102_I 0.79 0.00
90_K 38_I 0.79 0.00
136_G 137_A 0.78 0.00
150_L 6_V 0.78 0.00
129_L 78_P 0.78 0.00
104_F 58_E 0.78 0.00
32_L 74_I 0.77 0.00
81_A 154_R 0.77 0.00
70_F 155_E 0.77 0.00
49_P 120_W 0.77 0.00
169_I 16_V 0.77 0.00
18_G 77_K 0.77 0.00
38_I 88_L 0.77 0.00
121_E 112_C 0.77 0.00
170_Y 68_R 0.77 0.00
181_A 130_P 0.77 0.00
24_E 147_T 0.77 0.00
181_A 148_T 0.77 0.00
180_S 8_V 0.77 0.00
105_I 73_D 0.76 0.00
148_Q 21_T 0.76 0.00
153_H 146_I 0.76 0.00
45_H 44_G 0.76 0.00
13_D 145_S 0.76 0.00
102_L 16_V 0.76 0.00
125_D 33_F 0.76 0.00
81_A 60_M 0.76 0.00
110_S 30_D 0.76 0.00
136_G 94_D 0.76 0.00
38_I 123_S 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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