May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NADD - PYRH
UniProt: P0A752 - P0A7E9
Length: 454
Sequences: 306
Seq/Len: 0.69
I_Prob: 0.00

NADD - Nicotinate-nucleotide adenylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NADD
PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
182_T 16_L 1.43 0.00
55_Q 165_T 1.41 0.00
86_A 241_E 1.35 0.00
113_T 149_A 1.31 0.00
148_Q 8_V 1.24 0.00
72_L 208_A 1.20 0.00
188_L 153_G 1.19 0.00
111_L 172_T 1.14 0.00
47_P 133_I 1.12 0.00
86_A 91_M 1.11 0.00
47_P 241_E 1.09 0.00
188_L 79_M 1.07 0.00
7_L 174_D 1.07 0.00
103_A 162_L 1.05 0.00
188_L 16_L 1.02 0.00
174_T 160_V 1.02 0.00
20_L 236_G 1.02 0.00
60_L 236_G 1.01 0.00
184_I 134_L 1.00 0.00
39_P 236_G 1.00 0.00
39_P 95_L 1.00 0.00
29_L 213_L 0.99 0.00
207_N 169_G 0.99 0.00
202_V 169_G 0.98 0.00
67_K 105_M 0.97 0.00
99_D 184_Y 0.97 0.00
192_E 126_L 0.96 0.00
198_L 217_V 0.95 0.00
129_L 14_L 0.95 0.00
40_N 202_L 0.94 0.00
118_Y 202_L 0.94 0.00
44_P 134_L 0.93 0.00
137_Y 174_D 0.93 0.00
86_A 130_R 0.92 0.00
44_P 165_T 0.92 0.00
137_Y 238_L 0.92 0.00
71_T 211_H 0.91 0.00
172_A 94_A 0.91 0.00
90_K 184_Y 0.91 0.00
7_L 60_L 0.90 0.00
190_N 131_V 0.89 0.00
55_Q 30_D 0.89 0.00
169_I 28_G 0.87 0.00
102_L 155_E 0.87 0.00
36_T 91_M 0.87 0.00
124_L 174_D 0.86 0.00
172_A 200_M 0.86 0.00
126_N 16_L 0.86 0.00
177_F 131_V 0.86 0.00
101_P 92_R 0.86 0.00
73_D 19_E 0.85 0.00
210_G 31_A 0.85 0.00
131_V 55_I 0.85 0.00
41_N 85_V 0.85 0.00
59_M 236_G 0.85 0.00
188_L 202_L 0.85 0.00
192_E 133_I 0.84 0.00
189_Q 172_T 0.84 0.00
118_Y 206_T 0.84 0.00
34_R 226_L 0.83 0.00
101_P 215_I 0.83 0.00
7_L 215_I 0.82 0.00
120_Y 53_V 0.82 0.00
171_L 149_A 0.82 0.00
45_H 40_E 0.82 0.00
193_S 220_M 0.82 0.00
83_S 105_M 0.81 0.00
206_I 19_E 0.81 0.00
183_I 182_T 0.81 0.00
119_E 35_D 0.81 0.00
122_T 16_L 0.81 0.00
99_D 127_R 0.81 0.00
200_E 192_V 0.81 0.00
81_A 13_L 0.81 0.00
118_Y 132_V 0.81 0.00
95_E 28_G 0.80 0.00
209_Q 174_D 0.80 0.00
175_P 27_F 0.80 0.00
186_E 185_E 0.80 0.00
210_G 157_E 0.80 0.00
137_Y 209_R 0.80 0.00
32_L 187_L 0.79 0.00
82_P 53_V 0.79 0.00
206_I 119_W 0.79 0.00
105_I 216_R 0.79 0.00
96_Q 127_R 0.78 0.00
89_L 36_R 0.78 0.00
92_W 34_L 0.78 0.00
29_L 30_D 0.78 0.00
68_P 171_F 0.78 0.00
206_I 18_G 0.78 0.00
124_L 176_A 0.77 0.00
80_N 169_G 0.77 0.00
125_D 12_I 0.77 0.00
105_I 208_A 0.77 0.00
89_L 35_D 0.77 0.00
35_V 229_V 0.77 0.00
54_V 8_V 0.77 0.00
206_I 149_A 0.77 0.00
34_R 193_L 0.77 0.00
175_P 20_A 0.77 0.00
177_F 91_M 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1709 seconds.