May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LPXA - LPXD
UniProt: P0A722 - P21645
Length: 603
Sequences: 598
Seq/Len: 1.01
I_Prob: 0.00

LPXA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
Paralog alert: 0.60 [within 20: 0.54] - ratio of genomes with paralogs
Cluster includes: LPXA
LPXD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
Paralog alert: 0.09 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: LPXD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
76_K 275_G 1.18 0.00
252_F 306_P 1.17 0.00
116_L 275_G 1.11 0.00
148_D 253_V 1.06 0.00
183_P 196_P 1.05 0.00
252_F 196_P 1.03 0.00
151_A 130_L 0.97 0.00
20_I 267_I 0.93 0.00
183_P 306_P 0.92 0.00
132_R 130_L 0.91 0.00
202_L 306_P 0.90 0.00
154_G 279_I 0.88 0.00
56_I 172_I 0.88 0.00
184_Y 53_L 0.86 0.00
135_L 315_K 0.85 0.00
131_N 278_E 0.85 0.00
159_V 13_L 0.85 0.00
26_I 203_I 0.85 0.00
100_R 10_A 0.83 0.00
35_H 118_I 0.83 0.00
179_Q 88_Q 0.83 0.00
186_I 205_D 0.83 0.00
99_H 28_V 0.82 0.00
39_G 224_I 0.82 0.00
14_V 82_T 0.82 0.00
134_I 159_T 0.81 0.00
26_I 330_L 0.81 0.00
246_V 205_D 0.80 0.00
129_V 291_V 0.80 0.00
14_V 156_A 0.79 0.00
183_P 87_A 0.79 0.00
177_V 273_I 0.79 0.00
72_N 254_I 0.79 0.00
246_V 73_A 0.78 0.00
116_L 186_A 0.78 0.00
181_V 156_A 0.78 0.00
139_A 198_I 0.78 0.00
216_R 148_I 0.78 0.00
86_I 76_V 0.78 0.00
72_N 230_I 0.77 0.00
76_K 47_Y 0.77 0.00
178_A 86_M 0.77 0.00
134_I 139_G 0.77 0.00
11_T 4_I 0.76 0.00
10_P 25_I 0.76 0.00
170_M 86_M 0.75 0.00
241_E 225_I 0.75 0.00
134_I 78_N 0.74 0.00
99_H 173_Q 0.74 0.00
154_G 164_I 0.74 0.00
210_E 112_L 0.74 0.00
76_K 41_F 0.73 0.00
97_T 9_L 0.73 0.00
124_A 39_I 0.73 0.00
191_H 185_Y 0.72 0.00
28_P 259_L 0.72 0.00
74_D 275_G 0.72 0.00
184_Y 14_D 0.72 0.00
115_N 39_I 0.72 0.00
181_V 264_Y 0.72 0.00
251_D 120_A 0.71 0.00
20_I 205_D 0.71 0.00
90_N 157_N 0.71 0.00
147_V 106_I 0.71 0.00
220_K 6_L 0.71 0.00
181_V 253_V 0.71 0.00
184_Y 154_L 0.70 0.00
250_T 315_K 0.70 0.00
111_V 89_I 0.70 0.00
222_I 215_I 0.70 0.00
174_C 250_A 0.70 0.00
47_H 198_I 0.70 0.00
37_E 160_I 0.70 0.00
132_R 133_N 0.70 0.00
111_V 108_A 0.69 0.00
100_R 51_L 0.69 0.00
236_I 205_D 0.69 0.00
114_D 58_A 0.69 0.00
20_I 315_K 0.68 0.00
48_V 130_L 0.68 0.00
235_E 37_G 0.68 0.00
36_V 60_V 0.68 0.00
173_G 290_M 0.68 0.00
206_G 318_A 0.68 0.00
68_I 268_G 0.68 0.00
96_V 110_A 0.68 0.00
251_D 220_L 0.68 0.00
250_T 246_N 0.68 0.00
223_Y 241_V 0.68 0.00
19_S 234_Q 0.68 0.00
30_C 234_Q 0.67 0.00
105_G 286_T 0.67 0.00
68_I 186_A 0.67 0.00
203_K 315_K 0.67 0.00
184_Y 323_I 0.67 0.00
215_I 4_I 0.67 0.00
137_N 253_V 0.67 0.00
215_I 237_I 0.67 0.00
252_F 87_A 0.67 0.00
236_I 64_D 0.67 0.00
207_F 209_I 0.67 0.00
215_I 235_C 0.66 0.00
160_H 143_G 0.66 0.00
197_V 160_I 0.66 0.00
111_V 53_L 0.66 0.00
76_K 80_Y 0.66 0.00
99_H 235_C 0.66 0.00
141_L 40_T 0.66 0.00
135_L 314_R 0.66 0.00
234_P 38_H 0.66 0.00
262_R 313_W 0.66 0.00
111_V 171_L 0.65 0.00
229_L 100_I 0.65 0.00
182_P 180_A 0.65 0.00
115_N 195_I 0.65 0.00
168_H 250_A 0.65 0.00
147_V 243_I 0.65 0.00
99_H 318_A 0.65 0.00
245_E 238_A 0.65 0.00
186_I 78_N 0.65 0.00
151_A 212_C 0.65 0.00
236_I 54_C 0.65 0.00
184_Y 234_Q 0.65 0.00
170_M 74_L 0.65 0.00
99_H 194_K 0.65 0.00
233_K 82_T 0.64 0.00
20_I 213_T 0.64 0.00
20_I 206_R 0.64 0.00
9_H 306_P 0.64 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.1367 seconds.