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OPENSEQ.org

IHFA - RL20
UniProt: P0A6X7 - P0A7L3
Length: 217
Sequences: 163
Seq/Len: 0.77
I_Prob: 0.49

IHFA - Integration host factor subunit alpha
Paralog alert: 0.56 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: DBHA DBHB IHFA IHFB
RL20 - 50S ribosomal protein L20
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL20
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
84_G 25_Y 1.97 0.49
46_L 18_L 1.58 0.22
44_V 15_K 1.47 0.16
84_G 27_A 1.32 0.10
88_K 70_R 1.25 0.08
84_G 40_I 1.23 0.07
83_P 72_N 1.20 0.07
84_G 30_R 1.20 0.07
2_A 78_K 1.19 0.07
41_G 12_A 1.19 0.07
16_L 80_I 1.15 0.06
20_K 68_A 1.15 0.06
82_R 27_A 1.11 0.05
8_M 118_A 1.11 0.05
1_M 113_A 1.11 0.05
41_G 71_Q 1.07 0.04
19_S 102_D 1.07 0.04
93_N 36_F 1.06 0.04
82_R 40_I 1.05 0.04
58_N 100_V 1.04 0.04
57_K 10_A 1.03 0.04
5_K 22_K 1.03 0.04
40_N 96_A 1.02 0.04
42_E 90_I 1.02 0.04
23_A 78_K 1.00 0.03
77_R 112_K 1.00 0.03
12_L 14_H 0.99 0.03
84_G 41_K 0.98 0.03
66_K 24_Y 0.98 0.03
80_T 70_R 0.97 0.03
74_T 19_K 0.96 0.03
76_R 38_A 0.95 0.03
82_R 30_R 0.94 0.03
94_A 87_S 0.94 0.03
59_Q 88_V 0.93 0.02
1_M 110_V 0.93 0.02
1_M 56_Q 0.93 0.02
28_E 29_S 0.93 0.02
83_P 116_A 0.92 0.02
82_R 25_Y 0.92 0.02
30_F 31_V 0.91 0.02
6_A 17_I 0.91 0.02
7_E 74_I 0.91 0.02
42_E 72_N 0.91 0.02
41_G 102_D 0.90 0.02
70_D 59_Q 0.90 0.02
87_L 83_L 0.90 0.02
59_Q 78_K 0.90 0.02
13_F 81_N 0.90 0.02
15_K 101_F 0.89 0.02
29_L 89_E 0.89 0.02
8_M 68_A 0.89 0.02
6_A 93_K 0.88 0.02
35_R 117_L 0.88 0.02
6_A 53_R 0.87 0.02
10_E 75_S 0.87 0.02
2_A 20_Q 0.86 0.02
25_E 109_L 0.86 0.02
26_L 11_R 0.85 0.02
32_E 100_V 0.85 0.02
41_G 109_L 0.84 0.02
70_D 113_A 0.84 0.02
84_G 29_S 0.84 0.02
92_E 24_Y 0.83 0.01
37_A 90_I 0.83 0.01
28_E 69_A 0.83 0.01
46_L 9_I 0.82 0.01
43_Q 72_N 0.82 0.01
7_E 73_G 0.81 0.01
9_S 101_F 0.81 0.01
19_S 105_A 0.81 0.01
84_G 75_S 0.80 0.01
41_G 93_K 0.80 0.01
11_Y 40_I 0.80 0.01
40_N 63_A 0.79 0.01
74_T 74_I 0.79 0.01
94_A 19_K 0.79 0.01
65_P 21_A 0.78 0.01
22_D 87_S 0.78 0.01
78_V 37_Q 0.78 0.01
26_L 2_A 0.78 0.01
72_P 44_Q 0.78 0.01
3_L 43_G 0.77 0.01
70_D 98_I 0.77 0.01
56_D 46_A 0.77 0.01
14_D 107_T 0.77 0.01
22_D 59_Q 0.77 0.01
16_L 11_R 0.75 0.01
58_N 94_I 0.75 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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