May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

FABZ - TAMA
UniProt: P0A6Q6 - P0ADE4
Length: 728
Sequences: 572
Seq/Len: 0.87
I_Prob: 0.00

FABZ - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
Paralog alert: 0.18 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: FABA FABZ
TAMA - Translocation and assembly module TamA
Paralog alert: 0.76 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: TAMA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
75_G 127_L 1.37 0.00
26_V 575_P 1.24 0.00
119_K 395_T 1.22 0.00
119_K 271_G 1.21 0.00
135_G 447_T 1.19 0.00
41_V 173_G 1.17 0.00
93_F 468_F 1.15 0.00
139_C 507_Q 1.14 0.00
114_E 74_Y 1.13 0.00
125_T 193_H 1.07 0.00
113_M 256_L 1.06 0.00
100_R 312_D 1.05 0.00
93_F 505_E 1.02 0.00
119_K 261_S 1.02 0.00
142_T 274_Y 1.02 0.00
100_R 276_T 1.02 0.00
45_S 429_F 1.01 0.00
137_V 79_I 1.01 0.00
45_S 504_L 1.00 0.00
80_K 553_L 1.00 0.00
40_A 94_L 1.00 0.00
140_E 265_E 0.99 0.00
102_K 166_A 0.99 0.00
134_D 393_S 0.98 0.00
103_R 305_S 0.98 0.00
118_E 169_G 0.98 0.00
92_Y 236_F 0.98 0.00
67_L 316_K 0.96 0.00
142_T 398_R 0.95 0.00
122_R 206_L 0.95 0.00
127_F 479_Y 0.95 0.00
25_L 156_K 0.94 0.00
92_Y 241_V 0.94 0.00
61_F 275_S 0.94 0.00
137_V 484_I 0.94 0.00
17_L 445_F 0.93 0.00
100_R 570_Y 0.93 0.00
60_I 140_G 0.93 0.00
26_V 68_G 0.93 0.00
96_I 485_A 0.93 0.00
50_F 257_T 0.93 0.00
119_K 428_V 0.92 0.00
60_I 176_K 0.92 0.00
36_R 117_A 0.92 0.00
102_K 74_Y 0.91 0.00
119_K 484_I 0.91 0.00
125_T 292_N 0.91 0.00
73_A 546_S 0.91 0.00
67_L 542_V 0.91 0.00
49_P 133_I 0.91 0.00
111_M 256_L 0.90 0.00
110_Q 269_E 0.90 0.00
31_D 90_G 0.90 0.00
97_D 439_L 0.90 0.00
141_A 535_K 0.90 0.00
139_C 344_S 0.89 0.00
74_T 319_L 0.89 0.00
60_I 159_F 0.89 0.00
96_I 384_M 0.88 0.00
70_M 410_R 0.88 0.00
74_T 305_S 0.88 0.00
76_I 85_P 0.88 0.00
137_V 451_L 0.88 0.00
121_R 352_S 0.88 0.00
79_F 524_E 0.87 0.00
28_R 354_Y 0.87 0.00
121_R 568_Q 0.87 0.00
137_V 388_P 0.87 0.00
12_E 99_T 0.87 0.00
113_M 362_Q 0.87 0.00
97_D 305_S 0.87 0.00
100_R 475_S 0.87 0.00
52_Q 171_A 0.87 0.00
78_A 397_S 0.87 0.00
34_E 78_T 0.86 0.00
17_L 407_D 0.86 0.00
102_K 325_E 0.86 0.00
118_E 256_L 0.86 0.00
145_C 392_I 0.86 0.00
60_I 284_A 0.85 0.00
96_I 283_K 0.85 0.00
113_M 375_T 0.85 0.00
103_R 373_H 0.84 0.00
98_E 103_P 0.84 0.00
32_F 546_S 0.84 0.00
38_L 402_M 0.84 0.00
117_F 534_F 0.84 0.00
96_I 546_S 0.84 0.00
9_Q 487_K 0.84 0.00
15_E 285_T 0.84 0.00
102_K 492_D 0.84 0.00
26_V 149_L 0.83 0.00
71_A 193_H 0.83 0.00
100_R 272_V 0.83 0.00
23_F 313_F 0.83 0.00
127_F 82_D 0.83 0.00
139_C 200_Q 0.83 0.00
100_R 263_R 0.83 0.00
45_S 241_V 0.82 0.00
95_G 338_D 0.82 0.00
126_R 348_T 0.82 0.00
57_G 555_F 0.82 0.00
119_K 479_Y 0.82 0.00
119_K 397_S 0.82 0.00
30_L 254_L 0.82 0.00
31_D 114_R 0.81 0.00
60_I 171_A 0.81 0.00
67_L 334_F 0.81 0.00
8_L 235_W 0.81 0.00
119_K 423_D 0.81 0.00
122_R 256_L 0.81 0.00
75_G 403_P 0.80 0.00
57_G 86_P 0.80 0.00
121_R 249_R 0.80 0.00
126_R 263_R 0.80 0.00
40_A 297_S 0.79 0.00
116_T 540_V 0.79 0.00
122_R 183_Y 0.79 0.00
136_K 110_D 0.79 0.00
136_K 451_L 0.79 0.00
137_V 235_W 0.79 0.00
98_E 133_I 0.79 0.00
124_L 127_L 0.79 0.00
139_C 411_Y 0.79 0.00
52_Q 235_W 0.78 0.00
129_G 442_R 0.78 0.00
17_L 551_I 0.78 0.00
137_V 457_G 0.78 0.00
94_A 464_P 0.78 0.00
145_C 386_F 0.78 0.00
36_R 65_I 0.78 0.00
98_E 310_T 0.78 0.00
102_K 415_Y 0.78 0.00
9_Q 127_L 0.77 0.00
13_I 227_N 0.77 0.00
34_E 313_F 0.77 0.00
128_K 272_V 0.77 0.00
103_R 370_S 0.77 0.00
67_L 256_L 0.77 0.00
14_L 314_S 0.77 0.00
137_V 426_F 0.77 0.00
43_N 279_G 0.77 0.00
93_F 412_S 0.77 0.00
60_I 349_L 0.77 0.00
50_F 469_F 0.77 0.00
14_L 94_L 0.77 0.00
135_G 522_S 0.77 0.00
14_L 541_G 0.77 0.00
96_I 423_D 0.77 0.00
93_F 486_P 0.77 0.00
132_L 497_S 0.76 0.00
13_I 301_S 0.76 0.00
102_K 187_E 0.76 0.00
90_L 126_L 0.76 0.00
76_I 181_I 0.76 0.00
96_I 569_F 0.76 0.00
135_G 98_V 0.76 0.00
120_T 200_Q 0.76 0.00
41_V 398_R 0.76 0.00
82_V 94_L 0.76 0.00
94_A 391_M 0.76 0.00
116_T 391_M 0.76 0.00
96_I 271_G 0.76 0.00
67_L 411_Y 0.76 0.00
14_L 446_V 0.76 0.00
85_L 351_A 0.75 0.00
28_R 562_K 0.75 0.00
102_K 474_R 0.75 0.00
45_S 306_A 0.75 0.00
67_L 102_V 0.75 0.00
100_R 551_I 0.75 0.00
90_L 286_W 0.75 0.00
138_V 426_F 0.75 0.00
81_S 520_V 0.75 0.00
85_L 98_V 0.75 0.00
104_P 574_G 0.75 0.00
146_A 191_F 0.75 0.00
11_E 173_G 0.75 0.00
71_A 403_P 0.75 0.00
30_L 365_I 0.74 0.00
100_R 567_L 0.74 0.00
49_P 258_G 0.74 0.00
26_V 362_Q 0.74 0.00
60_I 123_Y 0.74 0.00
145_C 417_N 0.74 0.00
40_A 138_N 0.74 0.00
119_K 526_V 0.74 0.00
85_L 149_L 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.4354 seconds.