May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
ENGB - YFGM
UniProt: P0A6P7 - P76576
Length: 416
Sequences: 427
Seq/Len: 1.15
I_Prob: 0.07
ENGB - Probable GTP-binding protein EngB
Paralog alert: 0.95 [within 20: 0.76] - ratio of genomes with paralogs
Cluster includes: ENGB 		YFGM - UPF0070 protein YfgM
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YFGM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4b4tL:J:M:K:Q:Q:H:R:I:OContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
91_M 12_E 1.54 0.07
85_A 103_E 1.39 0.04
84_Y 43_N 1.36 0.04
133_A 162_D 1.35 0.04
151_A 172_G 1.30 0.04
159_L 59_N 1.30 0.04
133_A 35_A 1.29 0.04
193_L 41_Y 1.25 0.03
84_Y 103_E 1.23 0.03
155_R 7_E 1.21 0.03
102_Y 132_A 1.14 0.02
29_V 53_A 1.13 0.02
116_M 92_L 1.12 0.02
186_V 13_A 1.11 0.02
90_E 26_A 1.10 0.02
28_E 54_S 1.09 0.02
29_V 147_T 1.09 0.02
50_K 174_K 1.09 0.02
93_R 50_A 1.06 0.02
113_V 124_K 1.05 0.02
54_R 34_G 1.04 0.02
71_A 115_L 1.04 0.02
150_L 17_F 1.04 0.02
93_R 102_N 1.02 0.01
90_E 12_E 1.02 0.01
174_Q 75_A 1.00 0.01
54_R 173_D 0.99 0.01
152_S 149_D 0.98 0.01
59_P 30_I 0.98 0.01
140_V 25_L 0.98 0.01
136_S 149_D 0.97 0.01
124_D 84_N 0.97 0.01
28_E 41_Y 0.97 0.01
29_V 17_F 0.97 0.01
91_M 66_E 0.95 0.01
45_T 133_R 0.95 0.01
77_V 141_A 0.94 0.01
172_D 4_Y 0.94 0.01
113_V 196_M 0.94 0.01
182_K 28_G 0.92 0.01
84_Y 12_E 0.92 0.01
116_M 108_A 0.92 0.01
109_L 176_G 0.92 0.01
66_N 171_K 0.91 0.01
69_E 49_S 0.91 0.01
50_K 7_E 0.91 0.01
150_L 12_E 0.91 0.01
86_E 16_R 0.91 0.01
183_K 162_D 0.90 0.01
170_N 97_Q 0.90 0.01
47_T 95_A 0.90 0.01
140_V 50_A 0.90 0.01
141_L 172_G 0.90 0.01
93_R 54_S 0.89 0.01
124_D 98_F 0.89 0.01
70_V 10_Q 0.89 0.01
129_M 173_D 0.88 0.01
159_L 31_L 0.87 0.01
31_F 25_L 0.87 0.01
95_W 116_A 0.87 0.01
197_F 154_E 0.87 0.01
76_L 35_A 0.87 0.01
142_V 77_K 0.87 0.01
180_S 171_K 0.87 0.01
116_M 188_D 0.86 0.01
118_I 83_K 0.86 0.01
31_F 156_W 0.86 0.01
142_V 195_E 0.86 0.01
154_A 57_Y 0.86 0.01
95_W 137_Q 0.86 0.01
65_I 2_E 0.85 0.01
144_L 175_Q 0.85 0.01
84_Y 188_D 0.85 0.01
181_L 136_V 0.85 0.01
27_I 106_K 0.84 0.01
151_A 35_A 0.84 0.01
193_L 93_E 0.84 0.01
149_K 17_F 0.84 0.01
143_L 29_V 0.83 0.01
65_I 29_V 0.83 0.01
193_L 89_L 0.83 0.01
155_R 15_K 0.83 0.01
86_E 129_L 0.83 0.01
163_R 85_T 0.82 0.01
143_L 22_G 0.82 0.01
192_K 198_Q 0.82 0.01
55_T 113_Q 0.82 0.01
68_F 18_F 0.82 0.01
31_F 153_G 0.81 0.01
108_S 10_Q 0.81 0.01
194_D 170_S 0.81 0.01
86_E 65_S 0.81 0.01
76_L 42_W 0.81 0.01
143_L 144_A 0.81 0.01
114_V 97_Q 0.81 0.01
174_Q 36_L 0.81 0.01
149_K 86_Y 0.81 0.01
106_R 9_D 0.80 0.01
158_Q 12_E 0.80 0.01
172_D 164_R 0.80 0.01
127_Q 196_M 0.80 0.01
135_D 34_G 0.80 0.01
112_L 27_V 0.80 0.01
30_A 4_Y 0.80 0.01
116_M 58_Q 0.79 0.01
163_R 103_E 0.79 0.01
34_R 90_A 0.79 0.01
69_E 62_T 0.79 0.01
55_T 197_M 0.79 0.01
195_T 32_G 0.79 0.01
37_A 7_E 0.79 0.01
46_L 17_F 0.79 0.01
113_V 191_P 0.79 0.01
109_L 161_A 0.78 0.01
193_L 84_N 0.78 0.01
91_M 173_D 0.78 0.01
93_R 174_K 0.78 0.01
91_M 53_A 0.78 0.01
136_S 62_T 0.78 0.01
37_A 25_L 0.78 0.01
121_P 42_W 0.78 0.01
58_T 143_A 0.78 0.01
188_K 173_D 0.77 0.01
75_R 163_L 0.77 0.01
164_E 33_V 0.77 0.01
53_A 78_F 0.77 0.01
65_I 156_W 0.77 0.01
74_K 17_F 0.77 0.01
186_V 20_E 0.76 0.01
28_E 26_A 0.76 0.01
143_L 59_N 0.76 0.01
186_V 133_R 0.76 0.01
122_L 94_L 0.76 0.01
61_R 144_A 0.76 0.01
46_L 6_N 0.76 0.01
109_L 14_V 0.76 0.01
43_L 130_R 0.76 0.01
140_V 191_P 0.76 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8934 seconds.