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OPENSEQ.org

ENGB - RODZ
UniProt: P0A6P7 - P27434
Length: 547
Sequences: 313
Seq/Len: 0.63
I_Prob: 0.00

ENGB - Probable GTP-binding protein EngB
Paralog alert: 0.95 [within 20: 0.76] - ratio of genomes with paralogs
Cluster includes: ENGB
RODZ - Cytoskeleton protein RodZ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RODZ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2p5tBHDF:AEGCContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_A 104_K 1.52 0.00
45_T 64_Y 1.46 0.00
193_L 62_R 1.44 0.00
124_D 60_F 1.42 0.00
121_P 38_C 1.36 0.00
50_K 205_P 1.36 0.00
84_Y 65_I 1.32 0.00
82_Y 125_I 1.29 0.00
93_R 274_K 1.25 0.00
149_K 63_G 1.23 0.00
108_S 59_T 1.21 0.00
68_F 56_L 1.21 0.00
155_R 237_P 1.20 0.00
139_A 60_F 1.20 0.00
142_V 275_L 1.19 0.00
123_K 97_M 1.19 0.00
144_L 74_I 1.18 0.00
55_T 280_Q 1.15 0.00
144_L 67_S 1.14 0.00
113_V 300_A 1.14 0.00
170_N 105_R 1.13 0.00
182_K 64_Y 1.13 0.00
32_A 52_A 1.12 0.00
123_K 116_F 1.12 0.00
183_K 64_Y 1.10 0.00
134_V 62_R 1.10 0.00
186_V 64_Y 1.10 0.00
127_Q 280_Q 1.09 0.00
71_A 83_L 1.09 0.00
54_R 125_I 1.09 0.00
29_V 67_S 1.09 0.00
71_A 250_A 1.09 0.00
84_Y 292_A 1.09 0.00
69_E 250_A 1.08 0.00
93_R 266_E 1.07 0.00
34_R 133_W 1.06 0.00
74_K 283_D 1.05 0.00
184_Q 59_T 1.05 0.00
124_D 271_T 1.05 0.00
133_A 88_P 1.05 0.00
122_L 36_R 1.04 0.00
129_M 64_Y 1.04 0.00
84_Y 141_E 1.03 0.00
142_V 163_S 1.02 0.00
186_V 280_Q 1.02 0.00
130_I 298_I 1.02 0.00
136_S 130_A 1.01 0.00
53_A 66_R 1.01 0.00
50_K 252_P 1.01 0.00
55_T 263_C 1.01 0.00
100_G 324_V 1.01 0.00
114_V 83_L 1.00 0.00
170_N 6_T 1.00 0.00
43_L 301_P 1.00 0.00
193_L 33_V 1.00 0.00
121_P 113_L 0.99 0.00
136_S 137_K 0.99 0.00
58_T 316_S 0.99 0.00
109_L 224_P 0.99 0.00
133_A 32_A 0.99 0.00
74_K 259_F 0.98 0.00
130_I 64_Y 0.98 0.00
128_Q 76_E 0.97 0.00
67_L 97_M 0.97 0.00
130_I 46_D 0.97 0.00
94_K 321_T 0.97 0.00
71_A 70_R 0.97 0.00
74_K 63_G 0.96 0.00
156_K 332_E 0.96 0.00
134_V 39_L 0.96 0.00
122_L 114_M 0.96 0.00
56_S 84_E 0.96 0.00
54_R 251_D 0.96 0.00
94_K 47_I 0.95 0.00
59_P 292_A 0.95 0.00
197_F 63_G 0.95 0.00
157_A 332_E 0.95 0.00
72_D 125_I 0.94 0.00
183_K 39_L 0.94 0.00
50_K 229_A 0.94 0.00
120_H 268_T 0.94 0.00
195_T 98_Q 0.94 0.00
29_V 279_M 0.93 0.00
150_L 259_F 0.93 0.00
67_L 273_K 0.93 0.00
53_A 59_T 0.93 0.00
196_W 324_V 0.93 0.00
84_Y 255_L 0.92 0.00
160_N 281_R 0.92 0.00
31_F 327_L 0.92 0.00
150_L 304_V 0.91 0.00
84_Y 52_A 0.91 0.00
150_L 266_E 0.91 0.00
86_E 20_R 0.91 0.00
50_K 161_G 0.91 0.00
32_A 126_G 0.91 0.00
86_E 305_Q 0.91 0.00
175_V 17_A 0.91 0.00
28_E 263_C 0.91 0.00
28_E 70_R 0.91 0.00
53_A 63_G 0.91 0.00
84_Y 270_A 0.90 0.00
109_L 332_E 0.90 0.00
139_A 316_S 0.90 0.00
127_Q 59_T 0.90 0.00
140_V 65_I 0.90 0.00
155_R 329_L 0.90 0.00
95_W 313_V 0.90 0.00
31_F 313_V 0.89 0.00
69_E 8_D 0.89 0.00
158_Q 286_L 0.89 0.00
151_A 183_S 0.89 0.00
181_L 44_V 0.89 0.00
184_Q 298_I 0.89 0.00
135_D 301_P 0.89 0.00
93_R 215_Q 0.89 0.00
50_K 99_S 0.89 0.00
46_L 300_A 0.88 0.00
46_L 114_M 0.88 0.00
100_G 272_G 0.88 0.00
186_V 259_F 0.88 0.00
54_R 55_D 0.88 0.00
197_F 38_C 0.88 0.00
123_K 118_W 0.87 0.00
106_R 265_L 0.87 0.00
29_V 262_D 0.87 0.00
67_L 59_T 0.87 0.00
84_Y 124_V 0.87 0.00
106_R 306_I 0.87 0.00
59_P 120_V 0.87 0.00
54_R 43_T 0.86 0.00
186_V 132_W 0.86 0.00
82_Y 321_T 0.86 0.00
158_Q 267_V 0.86 0.00
113_V 110_D 0.85 0.00
45_T 298_I 0.85 0.00
143_L 20_R 0.85 0.00
69_E 169_S 0.85 0.00
123_K 296_L 0.85 0.00
150_L 225_A 0.85 0.00
158_Q 261_A 0.85 0.00
158_Q 263_C 0.84 0.00
91_M 188_A 0.84 0.00
75_R 110_D 0.84 0.00
113_V 139_Q 0.84 0.00
50_K 228_A 0.84 0.00
71_A 41_V 0.84 0.00
193_L 50_D 0.84 0.00
54_R 50_D 0.84 0.00
87_V 305_Q 0.84 0.00
157_A 52_A 0.84 0.00
32_A 46_D 0.84 0.00
74_K 69_A 0.84 0.00
183_K 259_F 0.83 0.00
175_V 256_V 0.83 0.00
113_V 256_V 0.83 0.00
72_D 324_V 0.83 0.00
128_Q 132_W 0.83 0.00
170_N 321_T 0.83 0.00
159_L 275_L 0.83 0.00
100_G 97_M 0.83 0.00
68_F 118_W 0.83 0.00
55_T 64_Y 0.83 0.00
188_K 38_C 0.82 0.00
188_K 280_Q 0.82 0.00
172_D 293_P 0.82 0.00
107_Q 80_L 0.82 0.00
100_G 325_A 0.82 0.00
58_T 256_V 0.82 0.00
136_S 116_F 0.82 0.00
119_R 37_L 0.82 0.00
184_Q 330_N 0.82 0.00
127_Q 64_Y 0.82 0.00
82_Y 64_Y 0.81 0.00
155_R 197_T 0.81 0.00
124_D 41_V 0.81 0.00
85_A 68_Y 0.81 0.00
105_K 20_R 0.81 0.00
158_Q 273_K 0.80 0.00
124_D 306_I 0.80 0.00
165_A 64_Y 0.80 0.00
59_P 46_D 0.80 0.00
56_S 227_T 0.80 0.00
140_V 18_R 0.80 0.00
31_F 69_A 0.80 0.00
50_K 120_V 0.80 0.00
46_L 104_K 0.80 0.00
149_K 259_F 0.80 0.00
32_A 75_P 0.80 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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