May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

EFG - RS7
UniProt: P0A6M8 - P02359
Length: 883
Sequences: 828
Seq/Len: 0.97
I_Prob: 0.00

EFG - Elongation factor G
Paralog alert: 0.37 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: EFG LEPA RF3 TYPA
RS7 - 30S ribosomal protein S7
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS7
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4kixV:GContact Map
3j3az:FContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
521_D 119_R 1.07 0.00
288_S 108_A 1.05 0.00
450_D 66_L 1.03 0.00
602_K 143_R 1.01 0.00
112_V 20_S 1.00 0.00
242_E 38_T 0.98 0.00
444_S 131_K 0.91 0.00
688_D 101_M 0.91 0.00
147_M 104_I 0.90 0.00
632_I 152_A 0.88 0.00
673_L 43_V 0.87 0.00
110_V 69_V 0.86 0.00
332_N 40_E 0.86 0.00
262_I 84_T 0.84 0.00
561_L 140_D 0.83 0.00
318_S 41_S 0.83 0.00
485_K 24_A 0.82 0.00
674_T 126_D 0.80 0.00
473_M 97_N 0.79 0.00
193_W 131_K 0.79 0.00
437_R 58_E 0.76 0.00
235_E 84_T 0.76 0.00
626_E 50_L 0.76 0.00
673_L 2_P 0.76 0.00
646_E 108_A 0.76 0.00
141_V 50_L 0.76 0.00
424_T 53_R 0.75 0.00
259_N 43_V 0.74 0.00
361_G 119_R 0.74 0.00
452_E 91_V 0.74 0.00
292_V 38_T 0.74 0.00
678_A 77_S 0.73 0.00
678_A 67_E 0.73 0.00
574_M 58_E 0.73 0.00
231_E 16_P 0.72 0.00
643_K 152_A 0.72 0.00
491_R 1_M 0.72 0.00
6_P 30_L 0.72 0.00
246_A 70_R 0.72 0.00
426_A 37_S 0.72 0.00
457_I 146_E 0.72 0.00
383_A 101_M 0.71 0.00
447_V 26_F 0.71 0.00
453_S 26_F 0.71 0.00
632_I 11_K 0.71 0.00
459_A 89_V 0.71 0.00
673_L 154_Y 0.70 0.00
678_A 56_K 0.70 0.00
1_M 131_K 0.70 0.00
424_T 67_E 0.70 0.00
383_A 96_R 0.70 0.00
453_S 110_K 0.70 0.00
169_L 19_G 0.69 0.00
679_S 4_R 0.69 0.00
603_E 130_N 0.69 0.00
667_A 69_V 0.69 0.00
10_Y 73_V 0.69 0.00
473_M 33_D 0.69 0.00
166_P 108_A 0.69 0.00
678_A 47_L 0.69 0.00
555_K 76_K 0.69 0.00
545_I 138_R 0.69 0.00
589_S 76_K 0.68 0.00
360_F 141_V 0.68 0.00
547_G 9_Q 0.68 0.00
316_P 139_E 0.68 0.00
166_P 24_A 0.68 0.00
580_F 139_E 0.68 0.00
43_V 33_D 0.67 0.00
616_I 55_G 0.67 0.00
571_V 45_S 0.67 0.00
619_V 91_V 0.67 0.00
523_Y 53_R 0.67 0.00
541_K 135_V 0.67 0.00
225_S 30_L 0.66 0.00
196_A 56_K 0.66 0.00
146_R 40_E 0.66 0.00
522_M 97_N 0.66 0.00
655_H 2_P 0.66 0.00
607_K 139_E 0.66 0.00
370_K 152_A 0.66 0.00
285_Y 93_P 0.66 0.00
203_E 23_L 0.66 0.00
612_L 17_K 0.66 0.00
694_V 98_A 0.66 0.00
288_S 48_E 0.66 0.00
451_E 69_V 0.66 0.00
567_A 80_V 0.66 0.00
447_V 80_V 0.66 0.00
635_L 137_K 0.65 0.00
579_H 138_R 0.65 0.00
469_I 97_N 0.65 0.00
673_L 5_R 0.65 0.00
512_R 138_R 0.65 0.00
560_Q 23_L 0.65 0.00
635_L 80_V 0.65 0.00
146_R 76_K 0.65 0.00
134_K 143_R 0.64 0.00
701_A 97_N 0.64 0.00
382_I 156_W 0.64 0.00
365_Q 2_P 0.64 0.00
326_T 76_K 0.64 0.00
551_P 48_E 0.64 0.00
566_L 42_I 0.64 0.00
483_V 9_Q 0.64 0.00
278_M 52_Q 0.64 0.00
373_E 30_L 0.64 0.00
661_S 98_A 0.64 0.00
681_T 154_Y 0.64 0.00
701_A 107_A 0.64 0.00
277_A 58_E 0.64 0.00
549_Y 53_R 0.63 0.00
555_K 18_F 0.63 0.00
651_G 84_T 0.63 0.00
637_R 9_Q 0.63 0.00
49_T 140_D 0.63 0.00
109_A 33_D 0.63 0.00
693_N 51_A 0.63 0.00
616_I 128_A 0.63 0.00
317_F 149_K 0.63 0.00
365_Q 66_L 0.63 0.00
138_I 38_T 0.62 0.00
609_K 57_S 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.7179 seconds.