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OPENSEQ.org
DAPA - USG
UniProt: P0A6L2 - P08390
Length: 629
Sequences: 379
Seq/Len: 0.61
I_Prob: 0.00
DAPA - 4-hydroxy-tetrahydrodipicolinate synthase
Paralog alert: 0.62 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: DAPA NANA YAGE YJHH 		USG - USG-1 protein
Paralog alert: 0.76 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ARGC DHAS USG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1nvmBFHD:AECGContact Map
4lrtBD:ACContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
10_V 282_Q 1.07 0.00
183_L 231_I 1.04 0.00
101_L 47_L 1.03 0.00
124_E 5_W 1.01 0.00
156_N 25_A 1.00 0.00
271_M 245_A 1.00 0.00
111_S 261_A 0.99 0.00
125_H 231_I 0.96 0.00
86_I 94_I 0.96 0.00
277_S 45_E 0.96 0.00
285_A 78_A 0.95 0.00
119_F 264_A 0.91 0.00
116_Y 325_V 0.91 0.00
143_L 188_E 0.90 0.00
139_T 271_I 0.90 0.00
163_A 292_L 0.89 0.00
286_L 153_I 0.89 0.00
48_S 325_V 0.88 0.00
197_L 214_R 0.88 0.00
39_I 147_Q 0.88 0.00
119_F 29_F 0.88 0.00
79_A 307_V 0.88 0.00
25_K 273_L 0.86 0.00
20_C 287_S 0.85 0.00
127_D 231_I 0.85 0.00
203_I 292_L 0.85 0.00
287_K 254_R 0.85 0.00
150_R 230_M 0.84 0.00
140_G 316_V 0.84 0.00
61_M 6_N 0.83 0.00
64_L 153_I 0.83 0.00
155_K 18_E 0.83 0.00
241_N 164_Q 0.83 0.00
209_V 276_E 0.82 0.00
32_V 65_T 0.82 0.00
94_D 9_V 0.82 0.00
103_V 138_L 0.81 0.00
51_L 20_L 0.81 0.00
207_A 80_A 0.81 0.00
230_R 317_R 0.81 0.00
286_L 25_A 0.81 0.00
93_N 331_L 0.81 0.00
243_L 288_G 0.81 0.00
280_E 263_D 0.81 0.00
6_I 138_L 0.80 0.00
181_F 137_L 0.80 0.00
247_P 307_V 0.80 0.00
85_A 144_L 0.80 0.00
127_D 254_R 0.80 0.00
19_V 217_V 0.80 0.00
173_I 35_Y 0.79 0.00
152_A 182_G 0.79 0.00
174_K 231_I 0.79 0.00
29_D 267_Q 0.79 0.00
76_G 24_L 0.79 0.00
22_A 228_G 0.79 0.00
132_L 149_G 0.79 0.00
268_R 294_V 0.79 0.00
52_N 267_Q 0.79 0.00
39_I 88_N 0.79 0.00
14_D 258_A 0.78 0.00
34_S 47_L 0.78 0.00
232_I 306_Q 0.78 0.00
46_G 99_L 0.78 0.00
79_A 34_I 0.77 0.00
196_Q 248_V 0.77 0.00
28_I 19_A 0.77 0.00
33_A 105_D 0.77 0.00
17_G 144_L 0.77 0.00
222_A 225_Q 0.76 0.00
223_E 55_T 0.76 0.00
157_I 264_A 0.76 0.00
159_G 267_Q 0.76 0.00
53_H 200_L 0.76 0.00
26_K 63_D 0.76 0.00
277_S 267_Q 0.76 0.00
160_I 36_A 0.76 0.00
36_T 37_L 0.76 0.00
122_I 288_G 0.75 0.00
155_K 271_I 0.75 0.00
284_A 78_A 0.75 0.00
101_L 138_L 0.75 0.00
120_K 70_A 0.75 0.00
206_T 168_A 0.75 0.00
28_I 315_N 0.75 0.00
146_E 100_F 0.75 0.00
259_L 9_V 0.74 0.00
74_I 272_V 0.74 0.00
269_L 90_G 0.74 0.00
64_L 78_A 0.74 0.00
19_V 325_V 0.74 0.00
236_L 52_K 0.74 0.00
20_C 148_G 0.74 0.00
135_V 153_I 0.74 0.00
58_D 260_E 0.73 0.00
72_P 273_L 0.73 0.00
61_M 53_T 0.73 0.00
86_I 150_L 0.73 0.00
147_T 138_L 0.73 0.00
32_V 332_V 0.73 0.00
166_N 94_I 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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