May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DEF - RIMN
UniProt: P0A6K3 - P45748
Length: 359
Sequences: 265
Seq/Len: 0.76
I_Prob: 0.01

DEF - Peptide deformylase
Paralog alert: 0.44 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: DEF
RIMN - tRNA threonylcarbamoyladenosine biosynthesis protein RimN
Paralog alert: 0.46 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIMN YCIO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
52_V 71_Y 1.53 0.01
78_L 20_E 1.27 0.00
8_H 31_F 1.21 0.00
45_I 119_T 1.20 0.00
15_R 115_A 1.20 0.00
120_E 23_I 1.11 0.00
66_N 183_T 1.11 0.00
115_D 154_V 1.10 0.00
131_I 39_S 1.07 0.00
156_R 136_V 1.06 0.00
5_Q 31_F 1.04 0.00
80_E 164_V 1.03 0.00
37_E 22_V 1.03 0.00
158_K 59_I 1.02 0.00
167_A 123_L 1.01 0.00
164_R 136_V 1.01 0.00
110_R 114_L 1.01 0.00
45_I 61_I 1.01 0.00
11_D 115_A 1.01 0.00
118_P 45_R 1.00 0.00
34_D 127_L 1.00 0.00
138_L 90_P 0.99 0.00
73_L 143_S 0.99 0.00
96_E 17_L 0.99 0.00
73_L 148_C 0.98 0.00
18_A 118_V 0.98 0.00
41_A 49_L 0.98 0.00
107_V 150_T 0.97 0.00
10_P 109_G 0.97 0.00
53_D 113_S 0.97 0.00
61_I 85_I 0.97 0.00
18_A 71_Y 0.97 0.00
32_V 48_E 0.96 0.00
110_R 160_A 0.96 0.00
3_V 148_C 0.96 0.00
30_R 183_T 0.94 0.00
28_I 16_V 0.94 0.00
76_P 112_D 0.94 0.00
25_N 44_M 0.93 0.00
65_E 43_V 0.93 0.00
135_M 97_F 0.93 0.00
6_V 133_K 0.93 0.00
111_A 70_P 0.92 0.00
31_I 78_T 0.92 0.00
145_D 138_T 0.92 0.00
32_V 102_T 0.92 0.00
54_I 162_F 0.92 0.00
26_A 125_V 0.91 0.00
114_R 180_D 0.91 0.00
53_D 15_D 0.90 0.00
142_L 56_K 0.90 0.00
25_N 119_T 0.90 0.00
107_V 171_G 0.90 0.00
129_I 65_Y 0.90 0.00
5_Q 150_T 0.90 0.00
104_A 68_L 0.90 0.00
9_I 123_L 0.90 0.00
28_I 177_E 0.89 0.00
26_A 96_V 0.89 0.00
63_V 166_P 0.88 0.00
135_M 134_P 0.88 0.00
121_L 103_T 0.87 0.00
84_E 160_A 0.87 0.00
79_L 96_V 0.87 0.00
150_L 29_A 0.87 0.00
101_V 142_L 0.87 0.00
43_E 150_T 0.86 0.00
52_V 47_L 0.86 0.00
59_I 95_F 0.86 0.00
98_R 78_T 0.86 0.00
125_G 158_F 0.85 0.00
28_I 103_T 0.85 0.00
114_R 162_F 0.85 0.00
122_E 103_T 0.85 0.00
110_R 63_A 0.85 0.00
83_G 160_A 0.85 0.00
78_L 43_V 0.85 0.00
114_R 24_A 0.84 0.00
116_G 28_E 0.84 0.00
110_R 43_V 0.84 0.00
2_S 21_R 0.84 0.00
104_A 107_L 0.84 0.00
28_I 159_G 0.84 0.00
127_L 63_A 0.83 0.00
96_E 14_I 0.83 0.00
126_L 56_K 0.83 0.00
94_I 49_L 0.83 0.00
142_L 116_V 0.83 0.00
69_E 49_L 0.83 0.00
19_K 65_Y 0.83 0.00
59_I 176_S 0.82 0.00
156_R 88_R 0.82 0.00
2_S 189_Q 0.82 0.00
24_V 154_V 0.82 0.00
130_C 47_L 0.81 0.00
107_V 135_L 0.81 0.00
60_V 109_G 0.81 0.00
22_E 16_V 0.81 0.00
40_Y 127_L 0.81 0.00
56_Q 113_S 0.81 0.00
61_I 43_V 0.81 0.00
33_D 180_D 0.81 0.00
72_V 159_G 0.80 0.00
130_C 175_P 0.80 0.00
151_K 25_Y 0.80 0.00
76_P 77_L 0.80 0.00
27_E 44_M 0.80 0.00
113_D 168_E 0.80 0.00
36_F 40_E 0.80 0.00
38_T 42_A 0.79 0.00
119_F 74_D 0.79 0.00
8_H 68_L 0.79 0.00
87_I 187_F 0.79 0.00
135_M 110_R 0.79 0.00
22_E 158_F 0.79 0.00
107_V 61_I 0.79 0.00
79_L 164_V 0.79 0.00
151_K 137_S 0.79 0.00
66_N 68_L 0.79 0.00
65_E 106_W 0.78 0.00
78_L 186_L 0.78 0.00
54_I 131_Y 0.78 0.00
115_D 75_T 0.78 0.00
119_F 46_L 0.78 0.00
127_L 171_G 0.78 0.00
104_A 116_V 0.78 0.00
130_C 109_G 0.78 0.00
79_L 31_F 0.78 0.00
156_R 43_V 0.78 0.00
7_L 28_E 0.78 0.00
138_L 91_G 0.78 0.00
32_V 153_E 0.78 0.00
129_I 111_F 0.77 0.00
42_E 31_F 0.77 0.00
124_D 88_R 0.77 0.00
7_L 37_P 0.77 0.00
78_L 114_L 0.77 0.00
28_I 123_L 0.77 0.00
25_N 158_F 0.77 0.00
129_I 142_L 0.77 0.00
102_P 129_Q 0.77 0.00
52_V 93_V 0.77 0.00
142_L 138_T 0.77 0.00
32_V 164_V 0.76 0.00
150_L 36_D 0.76 0.00
73_L 31_F 0.76 0.00
83_G 114_L 0.76 0.00
78_L 86_F 0.76 0.00
155_I 59_I 0.76 0.00
84_E 18_N 0.76 0.00
147_L 64_N 0.76 0.00
20_P 164_V 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.5596 seconds.