May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

COAD - RSMD
UniProt: P0A6I6 - P0ADX9
Length: 357
Sequences: 800
Seq/Len: 2.38
I_Prob: 0.33

COAD - Phosphopantetheine adenylyltransferase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: COAD
RSMD - Ribosomal RNA small subunit methyltransferase D
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSMD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
130_S 187_Y 1.39 0.33
87_I 24_L 1.11 0.15
126_F 177_K 1.03 0.12
47_T 77_G 1.00 0.11
72_D 152_A 0.94 0.09
113_L 24_L 0.92 0.08
35_A 184_Y 0.91 0.07
25_A 156_V 0.84 0.06
133_K 95_L 0.81 0.05
47_T 22_R 0.81 0.05
108_H 63_S 0.80 0.05
10_T 19_W 0.80 0.05
64_N 175_R 0.77 0.04
16_N 36_T 0.77 0.04
86_L 152_A 0.77 0.04
66_E 89_Q 0.77 0.04
7_Y 42_T 0.76 0.04
39_S 179_A 0.75 0.04
120_P 42_T 0.75 0.04
118_L 51_I 0.73 0.04
78_A 71_L 0.73 0.04
25_A 32_L 0.73 0.04
87_I 156_V 0.72 0.04
107_R 45_N 0.72 0.04
39_S 35_T 0.71 0.03
128_S 36_T 0.71 0.03
63_G 124_V 0.71 0.03
148_E 159_E 0.71 0.03
114_E 35_T 0.70 0.03
54_L 23_K 0.69 0.03
120_P 32_L 0.69 0.03
46_F 36_T 0.69 0.03
37_A 113_F 0.69 0.03
19_I 176_E 0.68 0.03
57_Q 140_N 0.68 0.03
157_K 20_R 0.68 0.03
96_F 125_F 0.68 0.03
49_E 55_Q 0.68 0.03
20_D 35_T 0.67 0.03
5_A 70_A 0.67 0.03
142_V 82_E 0.67 0.03
75_A 22_R 0.67 0.03
138_H 19_W 0.67 0.03
29_F 48_A 0.67 0.03
155_M 93_K 0.66 0.03
28_M 16_G 0.66 0.03
132_V 110_A 0.66 0.03
36_I 154_I 0.66 0.03
157_K 67_G 0.66 0.03
59_T 102_N 0.66 0.03
108_H 56_C 0.66 0.03
74_M 78_A 0.65 0.03
122_K 142_L 0.65 0.03
116_V 138_T 0.65 0.03
96_F 45_N 0.65 0.03
124_W 43_L 0.65 0.03
20_D 38_R 0.65 0.03
35_A 46_W 0.65 0.02
109_L 148_L 0.64 0.02
126_F 20_R 0.64 0.02
103_A 63_S 0.64 0.02
82_H 190_E 0.63 0.02
88_R 182_V 0.63 0.02
98_Y 87_V 0.63 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.333 seconds.