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OPENSEQ.org

CLPX - ENGB
UniProt: P0A6H1 - P0A6P7
Length: 634
Sequences: 383
Seq/Len: 0.64
I_Prob: 0.00

CLPX - ATP-dependent Clp protease ATP-binding subunit ClpX
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CLPX
ENGB - Probable GTP-binding protein EngB
Paralog alert: 0.95 [within 20: 0.76] - ratio of genomes with paralogs
Cluster includes: ENGB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1sxjC:D:E:A:B:EContact Map
3j3az:pContact Map
2qbyA:B:B:AContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_A 167_L 1.40 0.00
123_S 98_A 1.36 0.00
366_K 42_A 1.31 0.00
376_V 16_P 1.27 0.00
320_E 93_R 1.19 0.00
134_R 29_V 1.18 0.00
304_F 98_A 1.17 0.00
134_R 191_Q 1.13 0.00
328_E 42_A 1.11 0.00
288_A 162_V 1.09 0.00
191_R 98_A 1.09 0.00
268_I 93_R 1.08 0.00
191_R 9_T 1.08 0.00
174_Q 87_V 1.08 0.00
115_I 103_L 1.07 0.00
286_L 51_S 1.06 0.00
325_I 55_T 1.03 0.00
86_K 160_N 1.02 0.00
367_T 185_G 1.01 0.00
29_I 47_T 1.01 0.00
117_L 111_G 1.01 0.00
190_S 133_A 1.00 0.00
333_L 170_N 0.99 0.00
324_Q 124_D 0.97 0.00
29_I 133_A 0.97 0.00
191_R 52_L 0.96 0.00
352_D 176_E 0.95 0.00
65_P 140_V 0.95 0.00
347_D 113_V 0.95 0.00
304_F 58_T 0.94 0.00
293_E 92_K 0.94 0.00
142_M 37_A 0.93 0.00
117_L 41_S 0.93 0.00
190_S 16_P 0.93 0.00
300_L 175_V 0.93 0.00
374_S 88_P 0.93 0.00
381_L 68_F 0.92 0.00
361_K 42_A 0.91 0.00
64_L 65_I 0.91 0.00
178_R 19_R 0.91 0.00
50_E 54_R 0.91 0.00
396_V 106_R 0.90 0.00
262_V 90_E 0.90 0.00
164_K 103_L 0.89 0.00
291_E 71_A 0.89 0.00
310_V 192_K 0.89 0.00
288_A 195_T 0.88 0.00
89_A 124_D 0.88 0.00
181_V 190_R 0.88 0.00
394_E 4_L 0.88 0.00
29_I 114_V 0.87 0.00
87_V 32_A 0.86 0.00
358_I 43_L 0.86 0.00
403_I 123_K 0.86 0.00
400_E 93_R 0.86 0.00
289_Q 143_L 0.85 0.00
313_T 143_L 0.85 0.00
82_E 90_E 0.85 0.00
87_V 89_E 0.85 0.00
262_V 193_L 0.85 0.00
341_F 16_P 0.85 0.00
175_K 8_Q 0.84 0.00
330_K 16_P 0.84 0.00
391_E 180_S 0.83 0.00
236_L 72_D 0.83 0.00
305_I 94_K 0.83 0.00
290_V 152_S 0.83 0.00
196_P 71_A 0.83 0.00
238_V 116_M 0.83 0.00
380_L 185_G 0.82 0.00
75_D 75_R 0.82 0.00
401_S 150_L 0.82 0.00
376_V 21_L 0.82 0.00
399_D 177_T 0.82 0.00
168_K 127_Q 0.81 0.00
89_A 196_W 0.81 0.00
292_P 185_G 0.81 0.00
33_S 114_V 0.81 0.00
374_S 94_K 0.81 0.00
99_L 71_A 0.81 0.00
27_K 98_A 0.80 0.00
340_L 19_R 0.80 0.00
258_I 162_V 0.80 0.00
164_K 55_T 0.80 0.00
34_V 20_H 0.80 0.00
117_L 32_A 0.80 0.00
69_E 159_L 0.79 0.00
403_I 52_L 0.79 0.00
411_L 131_E 0.79 0.00
66_T 52_L 0.79 0.00
288_A 136_S 0.79 0.00
366_K 141_L 0.79 0.00
89_A 25_T 0.79 0.00
134_R 94_K 0.79 0.00
82_E 163_R 0.79 0.00
82_E 174_Q 0.79 0.00
190_S 162_V 0.79 0.00
256_K 42_A 0.78 0.00
117_L 144_L 0.78 0.00
173_V 9_T 0.78 0.00
328_E 17_D 0.78 0.00
35_Y 112_L 0.78 0.00
62_S 34_R 0.78 0.00
312_A 14_S 0.78 0.00
116_L 95_W 0.78 0.00
147_T 31_F 0.78 0.00
255_D 195_T 0.77 0.00
341_F 172_D 0.77 0.00
305_I 159_L 0.77 0.00
396_V 160_N 0.77 0.00
168_K 152_S 0.77 0.00
173_V 137_N 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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