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OPENSEQ.org
ATPE - ATPG
UniProt: P0A6E6 - P0ABA6
Length: 426
Sequences: 917
Seq/Len: 2.16
I_Prob: 0.82
ATPE - ATP synthase epsilon chain
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPE 		ATPG - ATP synthase gamma chain
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATPG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2qe7G:HContact Map
2ck3G:HContact Map
3ziaGQ:HRContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
43_L 56_L 1.68 0.82
9_V 215_L 1.28 0.50
69_I 221_R 1.25 0.47
95_A 189_L 1.15 0.37
89_D 242_A 1.13 0.35
49_G 5_K 1.13 0.35
67_G 222_R 1.13 0.35
40_A 207_L 1.12 0.34
67_G 209_E 1.04 0.27
45_A 215_L 1.04 0.27
75_G 197_D 1.04 0.27
26_V 212_P 1.04 0.26
64_Y 268_A 1.03 0.26
71_E 244_M 1.03 0.26
79_V 56_L 1.03 0.26
48_P 30_S 1.02 0.25
12_A 6_E 1.01 0.24
71_E 206_Y 0.98 0.22
60_E 249_A 0.97 0.21
71_E 26_M 0.97 0.21
41_P 206_Y 0.96 0.20
52_R 176_I 0.94 0.19
61_E 177_N 0.94 0.19
64_Y 14_V 0.93 0.18
28_G 209_E 0.93 0.18
43_L 52_V 0.92 0.17
71_E 48_T 0.92 0.17
119_S 228_V 0.90 0.16
38_G 282_S 0.90 0.16
84_A 144_P 0.89 0.15
134_L 251_T 0.86 0.14
67_G 25_E 0.86 0.14
11_S 19_K 0.85 0.13
58_G 35_S 0.85 0.13
57_H 231_G 0.84 0.13
32_E 224_V 0.84 0.12
103_E 172_S 0.84 0.12
105_H 41_A 0.83 0.12
23_K 16_N 0.83 0.12
58_G 81_V 0.83 0.12
49_G 92_N 0.83 0.12
59_H 231_G 0.83 0.12
58_G 145_S 0.83 0.12
53_I 12_A 0.83 0.12
59_H 160_Y 0.82 0.12
79_V 160_Y 0.82 0.11
47_K 19_K 0.82 0.11
33_L 245_V 0.82 0.11
24_I 22_K 0.82 0.11
101_K 207_L 0.81 0.11
57_H 81_V 0.81 0.11
84_A 244_M 0.81 0.11
86_R 26_M 0.81 0.11
129_L 100_L 0.81 0.11
99_K 160_Y 0.80 0.11
23_K 242_A 0.80 0.11
66_S 49_M 0.80 0.11
131_V 172_S 0.80 0.11
88_Q 10_K 0.80 0.11
72_V 242_A 0.80 0.11
46_I 180_S 0.80 0.10
75_G 105_T 0.79 0.10
25_Q 242_A 0.79 0.10
44_T 158_Q 0.79 0.10
111_G 112_Q 0.79 0.10
50_M 170_I 0.79 0.10
43_L 160_Y 0.79 0.10
69_I 275_Q 0.79 0.10
10_V 233_V 0.79 0.10
28_G 46_A 0.79 0.10
5_Y 97_K 0.79 0.10
5_Y 68_L 0.78 0.10
73_Q 55_H 0.78 0.10
81_A 52_V 0.78 0.10
53_I 174_K 0.78 0.10
72_V 244_M 0.78 0.10
10_V 231_G 0.78 0.10
136_K 215_L 0.78 0.09
81_A 219_L 0.77 0.09
102_A 90_G 0.77 0.09
81_A 165_L 0.77 0.09
21_V 277_L 0.76 0.09
43_L 143_N 0.76 0.09
25_Q 126_F 0.76 0.09
48_P 96_F 0.76 0.09
82_D 222_R 0.76 0.09
77_V 35_S 0.75 0.09
129_L 53_I 0.75 0.08
83_T 6_E 0.75 0.08
77_V 262_Q 0.75 0.08
65_L 2_A 0.74 0.08
132_I 260_E 0.74 0.08
28_G 115_L 0.74 0.08
69_I 238_S 0.74 0.08
44_T 60_N 0.74 0.08
59_H 213_K 0.74 0.08
35_I 18_Q 0.74 0.08
103_E 287_V 0.74 0.08
11_S 191_L 0.74 0.08
86_R 235_N 0.73 0.08
104_E 172_S 0.73 0.08
5_Y 46_A 0.73 0.08
6_H 282_S 0.73 0.08
117_Q 170_I 0.73 0.08
30_E 133_V 0.72 0.07
22_E 103_M 0.72 0.07
10_V 28_A 0.72 0.07
66_S 272_S 0.72 0.07
28_G 242_A 0.72 0.07
62_F 277_L 0.72 0.07
30_E 251_T 0.72 0.07
88_Q 213_K 0.71 0.07
43_L 227_Q 0.71 0.07
105_H 123_V 0.71 0.07
80_L 188_L 0.71 0.07
56_Q 228_V 0.71 0.07
59_H 211_D 0.71 0.07
52_R 104_K 0.71 0.07
26_V 59_G 0.71 0.07
112_D 45_Y 0.70 0.07
25_Q 166_D 0.70 0.07
130_R 171_V 0.70 0.07
132_I 256_S 0.70 0.07
45_A 53_I 0.70 0.07
22_E 105_T 0.70 0.07
52_R 177_N 0.70 0.07
28_G 82_S 0.70 0.07
27_T 78_Y 0.70 0.07
82_D 122_G 0.70 0.07
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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