May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ACP - RNC
UniProt: P0A6A8 - P0A7Y0
Length: 304
Sequences: 513
Seq/Len: 1.74
I_Prob: 0.13

ACP - Acyl carrier protein
Paralog alert: 0.32 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ACP
RNC - Ribonuclease 3
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
10_K 177_V 1.41 0.13
49_E 183_A 1.29 0.09
40_T 36_H 1.25 0.08
68_A 205_G 1.22 0.08
66_V 56_L 1.15 0.06
46_A 141_Q 1.11 0.05
54_E 161_Q 1.05 0.04
13_G 189_T 1.04 0.04
40_T 77_R 1.03 0.04
70_I 92_E 1.03 0.04
49_E 161_Q 1.02 0.04
61_E 46_S 1.00 0.04
40_T 172_P 1.00 0.04
47_L 129_I 0.99 0.04
46_A 119_L 0.99 0.04
46_A 140_Y 0.97 0.03
71_D 216_A 0.97 0.03
52_D 57_Y 0.95 0.03
69_A 53_A 0.95 0.03
44_V 33_S 0.94 0.03
69_A 140_Y 0.92 0.03
18_V 14_G 0.92 0.03
43_L 88_F 0.91 0.03
52_D 85_A 0.91 0.03
15_Q 141_Q 0.91 0.03
13_G 37_N 0.91 0.03
50_E 65_E 0.89 0.03
26_N 94_L 0.89 0.02
58_E 53_A 0.88 0.02
52_D 158_T 0.87 0.02
70_I 158_T 0.87 0.02
27_A 87_E 0.87 0.02
46_A 27_L 0.87 0.02
67_Q 204_T 0.87 0.02
52_D 60_F 0.86 0.02
75_G 206_S 0.86 0.02
52_D 116_V 0.86 0.02
20_Q 177_V 0.85 0.02
8_V 134_K 0.85 0.02
22_E 50_Y 0.84 0.02
24_T 158_T 0.84 0.02
69_A 17_F 0.84 0.02
20_Q 46_S 0.84 0.02
69_A 83_E 0.84 0.02
70_I 55_A 0.83 0.02
12_I 93_C 0.83 0.02
49_E 174_Y 0.83 0.02
24_T 113_A 0.83 0.02
77_Q 220_L 0.83 0.02
63_I 33_S 0.82 0.02
8_V 61_P 0.82 0.02
68_A 210_K 0.81 0.02
5_E 79_N 0.81 0.02
70_I 160_L 0.81 0.02
70_I 64_D 0.81 0.02
58_E 90_L 0.81 0.02
16_L 77_R 0.79 0.02
56_P 36_H 0.79 0.02
63_I 213_Q 0.79 0.02
47_L 114_D 0.79 0.02
76_H 220_L 0.78 0.02
12_I 10_Q 0.77 0.02
70_I 89_E 0.77 0.02
71_D 191_H 0.77 0.01
40_T 69_S 0.77 0.01
40_T 136_I 0.76 0.01
38_L 184_H 0.76 0.01
66_V 213_Q 0.76 0.01
12_I 7_N 0.76 0.01
22_E 120_I 0.76 0.01
58_E 191_H 0.75 0.01
73_I 62_R 0.75 0.01
62_K 91_G 0.75 0.01
40_T 164_L 0.75 0.01
59_E 201_V 0.75 0.01
69_A 125_L 0.75 0.01
47_L 119_L 0.75 0.01
14_E 33_S 0.74 0.01
6_E 18_N 0.74 0.01
25_N 46_S 0.74 0.01
24_T 203_G 0.74 0.01
30_V 123_V 0.74 0.01
44_V 152_K 0.74 0.01
10_K 59_R 0.74 0.01
24_T 198_S 0.74 0.01
50_E 88_F 0.73 0.01
59_E 114_D 0.73 0.01
8_V 81_L 0.73 0.01
71_D 144_L 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.5653 seconds.