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OPENSEQ.org
DDLB - MURG
UniProt: P07862 - P17443
Length: 661
Sequences: 757
Seq/Len: 1.18
I_Prob: 0.00
DDLB - D-alanine--D-alanine ligase B
Paralog alert: 0.89 [within 20: 0.46] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK 		MURG - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
Paralog alert: 0.39 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: MURG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
190_V 107_S 1.28 0.00
231_A 138_A 1.04 0.00
18_V 162_V 0.98 0.00
65_R 197_L 0.98 0.00
209_F 264_L 0.95 0.00
143_V 345_V 0.91 0.00
283_V 19_V 0.90 0.00
191_A 65_L 0.90 0.00
159_A 318_L 0.88 0.00
292_M 81_F 0.88 0.00
290_A 112_L 0.87 0.00
303_E 139_K 0.86 0.00
50_L 241_T 0.85 0.00
9_L 329_M 0.84 0.00
103_L 317_T 0.83 0.00
92_A 15_T 0.83 0.00
251_K 123_L 0.82 0.00
90_A 114_A 0.82 0.00
58_V 332_R 0.82 0.00
40_V 294_P 0.82 0.00
85_G 219_G 0.81 0.00
298_V 267_S 0.81 0.00
179_I 146_Q 0.80 0.00
248_L 200_T 0.79 0.00
251_K 8_L 0.79 0.00
14_A 343_E 0.79 0.00
101_K 197_L 0.79 0.00
214_A 267_S 0.78 0.00
183_L 98_V 0.78 0.00
109_L 30_M 0.78 0.00
251_K 143_K 0.77 0.00
209_F 147_A 0.77 0.00
248_L 195_R 0.77 0.00
173_H 316_N 0.77 0.00
183_L 122_V 0.76 0.00
17_E 258_V 0.76 0.00
247_T 258_V 0.76 0.00
177_V 312_D 0.76 0.00
114_W 22_G 0.76 0.00
213_E 199_Q 0.76 0.00
18_V 223_Q 0.76 0.00
296_Q 228_Q 0.76 0.00
122_F 310_S 0.75 0.00
204_Q 269_I 0.75 0.00
112_A 226_V 0.75 0.00
178_L 316_N 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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