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OPENSEQ.org

DDLB - MRAY
UniProt: P07862 - P0A6W3
Length: 666
Sequences: 592
Seq/Len: 0.90
I_Prob: 0.00

DDLB - D-alanine--D-alanine ligase B
Paralog alert: 0.89 [within 20: 0.46] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK
MRAY - Phospho-N-acetylmuramoyl-pentapeptide-transferase
Paralog alert: 0.61 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: MRAY WECA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
112_A 270_S 1.10 0.00
5_I 324_I 1.07 0.00
112_A 283_L 1.07 0.00
294_F 38_L 1.04 0.00
173_H 311_F 1.03 0.00
17_E 299_V 1.01 0.00
172_Q 131_R 0.99 0.00
235_A 263_V 0.96 0.00
265_Q 111_I 0.96 0.00
54_G 141_A 0.95 0.00
213_E 328_Y 0.94 0.00
155_S 81_T 0.93 0.00
61_A 52_S 0.93 0.00
137_L 353_G 0.92 0.00
226_P 58_R 0.91 0.00
175_E 324_I 0.91 0.00
20_L 353_G 0.91 0.00
197_I 121_V 0.90 0.00
35_I 263_V 0.89 0.00
77_E 184_I 0.88 0.00
111_V 288_F 0.88 0.00
171_F 275_G 0.88 0.00
248_L 131_R 0.88 0.00
280_H 270_S 0.87 0.00
4_K 309_G 0.87 0.00
301_I 128_L 0.87 0.00
183_L 187_T 0.86 0.00
34_G 214_L 0.86 0.00
58_V 347_L 0.86 0.00
179_I 247_V 0.86 0.00
123_E 36_I 0.85 0.00
292_M 6_A 0.83 0.00
269_L 277_L 0.83 0.00
105_Q 139_V 0.82 0.00
156_K 176_Y 0.82 0.00
32_E 106_V 0.82 0.00
58_V 83_I 0.81 0.00
294_F 310_S 0.81 0.00
90_A 220_G 0.80 0.00
177_V 140_I 0.80 0.00
89_M 107_G 0.79 0.00
151_S 215_V 0.79 0.00
31_R 306_L 0.79 0.00
31_R 78_M 0.78 0.00
134_I 106_V 0.78 0.00
117_L 311_F 0.77 0.00
137_L 256_F 0.77 0.00
33_G 24_F 0.77 0.00
17_E 311_F 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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