May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
HISP - UBIX
UniProt: P07109 - P0AG03
Length: 446
Sequences: 489
Seq/Len: 1.15
I_Prob: 0.00
HISP - Histidine transport ATP-binding protein HisP
Paralog alert: 0.94 [within 20: 0.87] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC 		UBIX - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Paralog alert: 0.25 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UBIX
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
132_A 84_I 0.84 0.00
195_M 95_I 0.78 0.00
15_Y 19_R 0.75 0.00
84_K 84_I 0.75 0.00
172_E 117_P 0.70 0.00
64_V 157_Q 0.70 0.00
45_S 69_A 0.69 0.00
59_E 60_D 0.67 0.00
52_N 17_G 0.66 0.00
170_E 73_S 0.66 0.00
56_K 84_I 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4219 seconds.