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RBSA - RBSC
UniProt: P04983 - P0AGI1
Length: 822
Sequences: 4422
Seq/Len: 5.58
I_Prob: 1.00
RBSA - Ribose import ATP-binding protein RbsA
Paralog alert: 0.93 [within 20: 0.28] - ratio of genomes with paralogs
Cluster includes: ALSA ARAG GSIA LSRA MGLA MODF RBSA UUP XYLG YBHF YBIT YEJF YHES YJJK YPHE YTFR 		RBSC - Ribose transport system permease protein RbsC
Paralog alert: 0.93 [within 20: 0.66] - ratio of genomes with paralogs
Cluster includes: ALSC ARAH LIVH LSRC LSRD MGLC RBSC XYLH YJFF YPHD YTFT
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4g1uCD:CD:ABContact Map
2nq2CD:CD:ABContact Map
2qi9CD:CD:ABContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
365_S 188_Y 3.01 1.00
112_K 188_Y 1.76 0.97
301_A 211_L 1.60 0.95
93_Q 204_G 1.20 0.79
371_E 197_R 1.06 0.66
105_E 198_Y 1.04 0.64
408_R 212_S 0.95 0.53
115_W 192_H 0.90 0.47
368_H 192_H 0.85 0.41
342_V 204_G 0.77 0.30
360_S 194_R 0.76 0.30
48_K 207_A 0.67 0.20
154_K 212_S 0.65 0.18
322_Q 215_N 0.64 0.17
339_D 207_A 0.62 0.16
91_I 204_G 0.61 0.15
356_L 198_Y 0.61 0.14
342_V 201_A 0.59 0.13
94_L 204_G 0.56 0.11
100_I 272_K 0.54 0.10
353_L 201_A 0.53 0.09
102_L 201_A 0.53 0.09
338_R 207_A 0.52 0.09
291_R 254_E 0.51 0.08
333_S 263_L 0.50 0.08
342_V 209_T 0.50 0.08
344_G 204_G 0.50 0.07
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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