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OPENSEQ.org

DNAA - DPO3B
UniProt: P03004 - P0A988
Length: 833
Sequences: 916
Seq/Len: 1.11
I_Prob: 0.04

DNAA - Chromosomal replication initiator protein DnaA
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DNAA
DPO3B - DNA polymerase III subunit beta
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DPO3B
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
284_S 267_F 1.50 0.04
359_V 258_A 1.40 0.03
375_T 135_M 1.28 0.02
247_Q 196_P 1.26 0.02
415_K 318_G 1.26 0.02
265_I 250_K 1.26 0.02
14_Q 73_R 1.24 0.02
50_W 175_H 1.24 0.02
423_P 274_S 1.18 0.01
240_F 174_G 1.15 0.01
93_S 259_G 1.14 0.01
14_Q 305_I 1.12 0.01
183_H 102_G 1.11 0.01
274_E 3_F 1.10 0.01
139_D 201_I 1.08 0.01
184_A 178_A 1.08 0.01
321_V 15_Q 1.08 0.01
22_F 136_K 1.07 0.01
388_K 116_F 1.06 0.01
185_V 285_V 1.06 0.01
36_N 353_A 1.06 0.01
50_W 242_P 1.06 0.01
259_E 263_L 1.05 0.01
237_I 185_G 1.04 0.01
150_A 72_A 1.04 0.01
275_I 270_A 1.04 0.01
265_I 165_E 1.02 0.01
171_Y 239_G 1.02 0.01
377_D 195_V 1.02 0.01
237_I 21_L 1.02 0.01
213_A 318_G 1.02 0.01
30_Q 60_V 1.01 0.01
185_V 100_R 1.01 0.01
28_P 175_H 1.01 0.01
40_L 220_S 1.00 0.01
146_S 241_F 1.00 0.01
324_F 266_A 0.99 0.01
268_S 99_V 0.99 0.01
273_K 50_E 0.99 0.01
216_N 29_I 0.98 0.01
38_L 260_C 0.98 0.01
39_A 182_M 0.98 0.01
174_T 145_S 0.97 0.01
186_G 21_L 0.97 0.01
150_A 170_V 0.97 0.01
206_F 2_K 0.97 0.01
355_T 195_V 0.96 0.01
444_I 355_Q 0.96 0.01
296_P 77_D 0.96 0.01
455_K 46_G 0.96 0.01
31_A 360_V 0.96 0.01
197_K 289_Q 0.96 0.01
149_L 272_I 0.96 0.01
197_K 39_D 0.95 0.01
439_H 68_T 0.95 0.01
63_L 116_F 0.95 0.01
226_Y 328_L 0.95 0.01
342_R 108_L 0.94 0.01
465_L 333_C 0.94 0.01
253_T 2_K 0.94 0.01
74_L 288_N 0.94 0.01
396_S 58_A 0.94 0.01
322_A 74_K 0.94 0.01
432_R 108_L 0.94 0.01
262_Q 288_N 0.94 0.01
35_D 163_E 0.94 0.01
134_V 309_T 0.93 0.01
294_I 42_L 0.93 0.01
90_A 262_L 0.92 0.01
25_W 310_Y 0.92 0.01
15_D 257_E 0.92 0.01
229_V 1_M 0.92 0.01
341_N 12_K 0.92 0.01
411_M 152_R 0.92 0.01
278_V 82_L 0.91 0.01
209_D 349_I 0.91 0.01
246_S 167_L 0.91 0.01
419_N 200_V 0.91 0.01
402_S 298_E 0.90 0.01
278_V 196_P 0.90 0.01
406_P 239_G 0.90 0.01
59_I 131_P 0.90 0.01
59_I 323_Y 0.90 0.01
454_I 303_E 0.90 0.01
301_T 222_N 0.90 0.01
24_M 203_L 0.89 0.01
330_R 366_L 0.89 0.01
385_E 198_K 0.89 0.01
355_T 323_Y 0.89 0.01
206_F 1_M 0.89 0.01
46_F 244_Y 0.89 0.01
35_D 75_F 0.89 0.01
396_S 260_C 0.89 0.01
97_A 63_H 0.88 0.01
454_I 107_S 0.88 0.01
414_A 48_D 0.88 0.01
201_M 25_P 0.88 0.01
311_D 292_I 0.88 0.01
267_T 350_E 0.88 0.01
170_L 18_S 0.88 0.01
359_V 35_L 0.88 0.01
403_V 100_R 0.88 0.01
5_L 318_G 0.88 0.01
265_I 357_A 0.88 0.01
240_F 107_S 0.88 0.01
389_I 326_D 0.88 0.01
148_Q 274_S 0.88 0.01
139_D 165_E 0.87 0.01
280_D 215_R 0.87 0.01
377_D 88_I 0.87 0.01
329_L 70_V 0.87 0.01
5_L 285_V 0.87 0.01
347_A 321_V 0.87 0.01
74_L 334_E 0.87 0.01
146_S 161_E 0.87 0.01
18_P 288_N 0.86 0.01
165_Y 147_A 0.86 0.01
333_V 45_T 0.86 0.01
294_I 35_L 0.86 0.01
187_N 232_F 0.86 0.01
437_V 302_A 0.86 0.01
110_A 355_Q 0.86 0.01
324_F 241_F 0.86 0.01
415_K 357_A 0.86 0.01
298_E 110_T 0.86 0.01
76_F 85_G 0.85 0.01
219_I 280_G 0.85 0.01
385_E 273_L 0.85 0.01
344_I 283_L 0.85 0.01
399_R 273_L 0.85 0.01
38_L 169_T 0.85 0.01
412_A 346_S 0.85 0.01
169_F 359_Y 0.85 0.01
325_I 77_D 0.85 0.01
213_A 44_L 0.85 0.01
212_K 115_D 0.85 0.01
357_D 163_E 0.85 0.01
234_I 257_E 0.85 0.01
213_A 357_A 0.85 0.01
378_N 147_A 0.85 0.01
25_W 144_F 0.85 0.01
414_A 77_D 0.85 0.01
435_T 224_R 0.85 0.01
356_I 48_D 0.84 0.01
278_V 353_A 0.84 0.01
280_D 216_V 0.84 0.01
419_N 3_F 0.84 0.01
244_E 137_R 0.84 0.01
191_A 313_A 0.84 0.01
424_E 224_R 0.84 0.01
187_N 76_F 0.84 0.01
278_V 70_V 0.84 0.01
185_V 283_L 0.84 0.01
385_E 263_L 0.84 0.01
356_I 90_V 0.84 0.01
140_N 199_G 0.84 0.01
186_G 5_V 0.84 0.01
386_Y 219_G 0.83 0.01
442_R 200_V 0.83 0.01
275_I 223_I 0.83 0.01
35_D 131_P 0.83 0.01
97_A 250_K 0.83 0.01
61_G 68_T 0.83 0.01
377_D 171_A 0.83 0.01
76_F 29_I 0.83 0.01
426_G 269_R 0.83 0.01
309_K 340_L 0.83 0.01
110_A 98_L 0.83 0.01
191_A 75_F 0.83 0.01
71_A 57_V 0.83 0.01
320_E 189_P 0.83 0.01
174_T 248_L 0.83 0.01
219_I 172_T 0.82 0.01
77_E 85_G 0.82 0.01
322_A 292_I 0.82 0.01
390_K 100_R 0.82 0.01
240_F 242_P 0.82 0.01
443_K 19_G 0.82 0.01
31_A 45_T 0.82 0.01
292_V 152_R 0.82 0.01
215_Q 167_L 0.82 0.01
240_F 265_Q 0.82 0.01
246_S 83_P 0.82 0.01
42_A 37_V 0.82 0.01
268_S 243_D 0.82 0.01
139_D 257_E 0.82 0.01
424_E 247_V 0.82 0.01
30_Q 195_V 0.82 0.01
10_L 93_E 0.82 0.01
199_V 75_F 0.82 0.00
117_W 216_V 0.82 0.00
256_A 4_T 0.82 0.00
37_T 216_V 0.82 0.00
333_V 76_F 0.82 0.00
150_A 10_L 0.81 0.00
438_L 19_G 0.81 0.00
14_Q 99_V 0.81 0.00
49_D 187_S 0.81 0.00
154_A 349_I 0.81 0.00
394_L 325_L 0.81 0.00
432_R 206_M 0.81 0.00
11_A 361_V 0.81 0.00
26_I 361_V 0.81 0.00
25_W 196_P 0.81 0.00
340_L 30_L 0.81 0.00
265_I 329_N 0.81 0.00
270_R 244_Y 0.81 0.00
438_L 238_D 0.81 0.00
377_D 247_V 0.81 0.00
199_V 144_F 0.81 0.00
404_A 19_G 0.81 0.00
111_P 130_L 0.81 0.00
461_L 309_T 0.81 0.00
355_T 12_K 0.81 0.00
296_P 110_T 0.81 0.00
438_L 105_R 0.81 0.00
306_L 193_V 0.81 0.00
364_R 240_R 0.81 0.00
18_P 91_Q 0.81 0.00
424_E 153_Y 0.81 0.00
182_L 245_R 0.81 0.00
278_V 114_A 0.80 0.00
32_E 292_I 0.80 0.00
134_V 160_F 0.80 0.00
265_I 100_R 0.80 0.00
384_A 241_F 0.80 0.00
409_M 245_R 0.80 0.00
30_Q 289_Q 0.80 0.00
321_V 318_G 0.80 0.00
349_F 205_R 0.80 0.00
136_H 10_L 0.80 0.00
245_R 334_E 0.80 0.00
231_A 68_T 0.80 0.00
265_I 304_E 0.80 0.00
292_V 335_N 0.80 0.00
380_Q 152_R 0.80 0.00
458_F 166_E 0.80 0.00
415_K 346_S 0.80 0.00
264_I 134_T 0.80 0.00
203_S 306_L 0.80 0.00
201_M 278_F 0.80 0.00
355_T 228_G 0.80 0.00
424_E 310_Y 0.80 0.00
381_K 324_V 0.79 0.00
145_K 137_R 0.79 0.00
328_R 59_L 0.79 0.00
275_I 341_T 0.79 0.00
438_L 2_K 0.79 0.00
425_I 24_R 0.79 0.00
438_L 116_F 0.79 0.00
398_R 118_N 0.79 0.00
442_R 302_A 0.79 0.00
330_R 174_G 0.79 0.00
343_V 273_L 0.79 0.00
205_R 161_E 0.79 0.00
191_A 355_Q 0.78 0.00
202_H 288_N 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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