May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PABA - YBIB
UniProt: P00903 - P30177
Length: 507
Sequences: 915
Seq/Len: 1.84
I_Prob: 0.00

PABA - Para-aminobenzoate synthase glutamine amidotransferase component II
Paralog alert: 0.89 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: HIS5 PABA
YBIB - Uncharacterized protein YbiB
Paralog alert: 0.33 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBIB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_V 123_R 0.87 0.00
159_Q 266_P 0.86 0.00
142_D 159_G 0.85 0.00
91_G 55_G 0.83 0.00
66_I 101_L 0.83 0.00
91_G 255_E 0.80 0.00
87_Q 86_P 0.80 0.00
89_F 105_L 0.76 0.00
75_I 272_E 0.76 0.00
158_R 308_T 0.76 0.00
172_I 300_L 0.76 0.00
158_R 315_R 0.75 0.00
99_V 168_Q 0.72 0.00
140_C 152_Q 0.72 0.00
17_Q 95_A 0.72 0.00
181_L 81_M 0.71 0.00
85_M 24_T 0.71 0.00
174_S 10_I 0.70 0.00
107_I 133_M 0.70 0.00
124_V 226_H 0.70 0.00
64_D 264_L 0.69 0.00
48_V 152_Q 0.69 0.00
93_V 74_T 0.68 0.00
96_A 54_E 0.68 0.00
139_A 307_A 0.68 0.00
15_L 130_F 0.68 0.00
65_V 170_A 0.67 0.00
37_A 173_W 0.66 0.00
95_R 101_L 0.66 0.00
93_V 234_A 0.66 0.00
100_M 165_L 0.65 0.00
104_T 131_E 0.65 0.00
28_V 131_E 0.65 0.00
95_R 305_E 0.65 0.00
27_L 21_D 0.64 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.5876 seconds.