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OPENSEQ.org
3RRL_A - 3RRL_B
PDB: 3RRL Query Sequences:

 Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 437
Sequences: 1330
Seq/Len: 3.06
I_Prob: 0.98
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
169_K 78_F 2.06 0.98
229_R 57_S 1.93 0.97
177_L 80_N 1.91 0.97
112_A 86_A 1.75 0.95
177_L 82_A 1.61 0.92
211_Q 92_H 1.61 0.92
170_T 46_L 1.60 0.92
226_I 55_E 1.56 0.90
170_T 49_I 1.49 0.88
170_T 72_V 1.48 0.87
169_K 72_V 1.16 0.64
225_K 68_E 1.15 0.64
208_I 93_I 1.14 0.62
209_Y 83_D 1.05 0.53
180_M 83_D 1.04 0.52
169_K 62_L 1.01 0.48
121_T 131_G 0.99 0.46
229_R 54_L 0.96 0.42
209_Y 86_A 0.96 0.42
10_K 186_L 0.95 0.40
95_V 93_I 0.93 0.38
130_G 30_A 0.91 0.36
230_S 56_G 0.90 0.34
227_T 52_Y 0.89 0.34
209_Y 87_M 0.89 0.33
177_L 83_D 0.86 0.30
26_F 44_N 0.86 0.30
228_T 54_L 0.85 0.30
228_T 58_V 0.85 0.29
140_E 161_K 0.85 0.29
26_F 99_G 0.84 0.28
170_T 76_A 0.83 0.27
162_L 39_V 0.83 0.27
230_S 54_L 0.83 0.27
226_I 58_V 0.83 0.27
228_T 56_G 0.76 0.20
68_K 151_K 0.75 0.19
186_V 182_K 0.74 0.19
26_F 23_I 0.74 0.18
63_I 77_S 0.74 0.18
225_K 52_Y 0.73 0.17
24_G 23_I 0.73 0.17
183_K 197_E 0.70 0.16
155_K 2_R 0.69 0.14
230_S 55_E 0.68 0.14
80_E 120_K 0.68 0.14
26_F 26_P 0.68 0.14
229_R 13_L 0.66 0.13
166_V 189_G 0.66 0.12
28_L 69_T 0.66 0.12
208_I 18_Y 0.66 0.12
29_C 122_M 0.66 0.12
46_D 106_N 0.66 0.12
181_A 94_D 0.65 0.12
60_G 160_G 0.65 0.12
79_G 122_M 0.65 0.12
41_K 190_V 0.65 0.12
191_E 192_L 0.65 0.12
209_Y 92_H 0.64 0.12
162_L 76_A 0.64 0.11
217_E 153_E 0.64 0.11
1_M 133_K 0.64 0.11
40_Y 35_G 0.64 0.11
53_N 67_K 0.64 0.11
77_Y 120_K 0.63 0.11
70_I 172_A 0.63 0.11
77_Y 101_M 0.63 0.11
10_K 193_D 0.63 0.10
135_E 153_E 0.62 0.10
192_I 145_Y 0.62 0.10
208_I 87_M 0.62 0.10
226_I 56_G 0.62 0.10
29_C 42_S 0.62 0.10
71_K 196_K 0.62 0.10
207_G 18_Y 0.61 0.10
125_T 127_D 0.61 0.10
99_P 127_D 0.60 0.09
229_R 51_A 0.60 0.09
225_K 58_V 0.60 0.09
226_I 54_L 0.60 0.09
174_F 81_S 0.60 0.09
108_H 86_A 0.60 0.09
119_T 127_D 0.60 0.09
108_H 90_G 0.60 0.09
171_A 28_L 0.60 0.09
71_K 145_Y 0.60 0.09
202_E 37_N 0.59 0.09
61_L 2_R 0.59 0.09
79_G 118_L 0.59 0.09
153_L 145_Y 0.59 0.09
18_G 200_E 0.59 0.09
208_I 47_L 0.59 0.09
15_L 200_E 0.59 0.08
213_I 37_N 0.59 0.08
179_A 46_L 0.58 0.08
97_L 119_I 0.58 0.08
39_I 175_E 0.58 0.08
27_G 9_A 0.58 0.08
21_I 80_N 0.58 0.08
68_K 188_E 0.58 0.08
142_I 192_L 0.58 0.08
121_T 130_H 0.58 0.08
121_T 90_G 0.58 0.08
13_S 34_S 0.58 0.08
45_K 105_Q 0.58 0.08
190_E 160_G 0.58 0.08
103_L 27_T 0.58 0.08
100_Q 81_S 0.57 0.08
45_K 197_E 0.57 0.08
97_L 122_M 0.57 0.08
128_A 13_L 0.57 0.08
189_V 165_H 0.57 0.08
205_L 39_V 0.57 0.08
202_E 161_K 0.57 0.08
211_Q 188_E 0.57 0.07
67_K 33_V 0.56 0.07
137_N 200_E 0.56 0.07
153_L 39_V 0.56 0.07
183_K 194_Q 0.56 0.07
229_R 143_N 0.56 0.07
102_T 129_V 0.56 0.07
168_R 49_I 0.56 0.07
63_I 2_R 0.56 0.07
124_G 162_G 0.56 0.07
71_K 105_Q 0.56 0.07
67_K 145_Y 0.56 0.07
7_D 83_D 0.56 0.07
214_Y 70_I 0.56 0.07
139_K 11_K 0.56 0.07
78_V 120_K 0.56 0.07
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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