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OPENSEQ.org

3RPF_A - 3RPF_C
PDB: 3RPF Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 217
Sequences: 753
Seq/Len: 3.86
I_Prob: 0.99
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
48_D 12_K 2.10 0.99
53_L 46_A 1.56 0.93
56_T 50_H 1.46 0.89
120_Y 13_E 1.45 0.89
50_Y 66_S 1.38 0.86
49_I 72_C 1.15 0.69
111_F 64_V 1.11 0.65
53_L 66_S 1.08 0.62
63_H 22_D 1.00 0.53
56_T 49_D 1.00 0.53
52_A 49_D 0.99 0.52
40_D 67_L 0.96 0.48
50_Y 46_A 0.95 0.47
102_E 59_L 0.94 0.46
121_D 66_S 0.93 0.44
53_L 68_L 0.92 0.43
60_K 50_H 0.91 0.42
61_W 5_V 0.87 0.37
104_Y 61_D 0.86 0.35
12_E 56_N 0.83 0.32
117_I 72_C 0.82 0.31
13_L 12_K 0.79 0.28
130_A 52_I 0.79 0.28
3_I 5_V 0.79 0.28
111_F 49_D 0.78 0.27
116_P 46_A 0.78 0.27
115_A 72_C 0.78 0.26
93_M 27_R 0.77 0.25
50_Y 71_V 0.76 0.24
85_Q 42_V 0.76 0.24
50_Y 64_V 0.75 0.23
3_I 59_L 0.74 0.23
87_S 68_L 0.74 0.22
7_A 4_E 0.73 0.21
42_I 10_P 0.72 0.21
51_E 30_L 0.72 0.20
57_W 51_L 0.72 0.20
15_K 56_N 0.72 0.20
109_E 1_M 0.71 0.20
43_Q 48_N 0.70 0.18
50_Y 49_D 0.69 0.18
85_Q 11_I 0.69 0.18
25_N 4_E 0.69 0.18
53_L 49_D 0.69 0.18
94_G 51_L 0.68 0.17
65_A 43_C 0.68 0.17
28_A 9_G 0.68 0.17
99_N 47_L 0.68 0.17
68_L 3_V 0.67 0.16
50_Y 8_F 0.67 0.16
35_I 27_R 0.67 0.16
135_H 71_V 0.66 0.15
31_V 24_K 0.65 0.14
23_A 30_L 0.65 0.14
108_I 71_V 0.64 0.14
50_Y 6_R 0.64 0.14
82_L 22_D 0.64 0.14
30_C 10_P 0.64 0.14
5_Q 25_E 0.64 0.14
131_K 42_V 0.64 0.14
74_M 6_R 0.64 0.14
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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