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OPENSEQ.org

3PNL_A - 3PNL_B
PDB: 3PNL Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 564
Sequences: 902
Seq/Len: 1.67
I_Prob: 0.10
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
78_T 43_R 1.41 0.10
106_T 180_Y 1.23 0.06
113_E 119_R 1.16 0.05
118_L 88_I 1.14 0.05
117_E 119_R 1.07 0.04
75_E 71_L 1.05 0.04
150_A 35_A 0.96 0.03
78_T 71_L 0.95 0.03
224_R 60_I 0.95 0.03
56_E 77_G 0.95 0.03
83_D 73_S 0.94 0.03
103_K 79_S 0.94 0.03
185_S 182_G 0.93 0.02
59_H 79_S 0.92 0.02
210_M 41_M 0.90 0.02
59_H 180_Y 0.87 0.02
152_T 79_S 0.87 0.02
330_T 144_S 0.84 0.02
118_L 69_M 0.84 0.02
131_I 79_S 0.84 0.02
47_L 41_M 0.84 0.02
209_E 92_Q 0.83 0.02
301_T 167_S 0.83 0.02
185_S 204_A 0.82 0.02
56_E 76_G 0.82 0.02
202_S 30_R 0.82 0.02
309_T 142_Q 0.82 0.02
170_D 155_E 0.81 0.01
82_P 37_H 0.81 0.01
48_L 106_Y 0.79 0.01
136_A 191_P 0.79 0.01
280_L 184_R 0.78 0.01
241_L 97_R 0.78 0.01
141_L 78_A 0.78 0.01
145_G 180_Y 0.77 0.01
156_E 179_S 0.77 0.01
113_E 121_K 0.76 0.01
322_L 109_F 0.76 0.01
71_A 79_S 0.76 0.01
240_T 116_V 0.76 0.01
350_A 77_G 0.76 0.01
68_L 180_Y 0.76 0.01
164_E 27_G 0.75 0.01
109_I 82_L 0.75 0.01
152_T 180_Y 0.75 0.01
137_V 44_G 0.75 0.01
216_I 79_S 0.75 0.01
82_P 195_S 0.74 0.01
17_G 76_G 0.74 0.01
84_K 78_A 0.74 0.01
192_A 30_R 0.73 0.01
155_I 79_S 0.73 0.01
47_L 179_S 0.73 0.01
239_D 103_E 0.73 0.01
330_T 7_I 0.73 0.01
210_M 91_A 0.73 0.01
214_V 113_A 0.73 0.01
71_A 77_G 0.72 0.01
336_D 205_L 0.72 0.01
123_G 95_Q 0.72 0.01
318_Y 18_F 0.72 0.01
198_A 39_L 0.72 0.01
69_S 164_A 0.71 0.01
329_I 51_K 0.71 0.01
81_T 81_P 0.71 0.01
103_K 180_Y 0.71 0.01
181_N 61_G 0.71 0.01
284_L 35_A 0.71 0.01
49_S 164_A 0.70 0.01
111_N 112_G 0.70 0.01
78_T 78_A 0.70 0.01
117_E 89_R 0.70 0.01
62_Y 91_A 0.69 0.01
123_G 174_R 0.69 0.01
151_N 35_A 0.69 0.01
56_E 81_P 0.69 0.01
110_L 165_A 0.69 0.01
204_T 30_R 0.68 0.01
164_E 159_S 0.68 0.01
272_Q 205_L 0.68 0.01
78_T 40_N 0.68 0.01
35_T 82_L 0.68 0.01
59_H 40_N 0.68 0.01
203_F 64_L 0.68 0.01
174_E 145_E 0.68 0.01
279_A 8_V 0.68 0.01
130_V 82_L 0.67 0.01
78_T 181_L 0.67 0.01
229_S 133_W 0.67 0.01
82_P 81_P 0.67 0.01
70_G 18_F 0.67 0.01
268_K 133_W 0.67 0.01
94_G 126_D 0.67 0.01
106_T 37_H 0.67 0.01
145_G 78_A 0.67 0.01
299_L 64_L 0.67 0.01
321_S 32_I 0.67 0.01
156_E 79_S 0.67 0.01
152_T 77_G 0.66 0.01
15_L 172_Q 0.66 0.01
342_W 17_I 0.66 0.01
168_S 206_A 0.66 0.01
199_G 184_R 0.66 0.01
197_A 81_P 0.66 0.01
197_A 75_V 0.66 0.01
239_D 107_Q 0.66 0.01
67_M 68_G 0.66 0.01
72_C 35_A 0.66 0.01
145_G 179_S 0.65 0.01
111_N 81_P 0.65 0.01
177_R 159_S 0.65 0.01
305_Q 103_E 0.65 0.01
78_T 195_S 0.65 0.01
226_P 159_S 0.65 0.01
78_T 119_R 0.65 0.01
297_N 162_E 0.65 0.01
59_H 179_S 0.65 0.01
200_K 84_G 0.65 0.01
216_I 180_Y 0.65 0.01
110_L 66_N 0.65 0.01
227_F 94_T 0.65 0.01
174_E 163_S 0.64 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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