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OPENSEQ.org

3IP4_A - 3IP4_B
PDB: 3IP4 Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 960
Sequences: 782
Seq/Len: 0.82
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
102_I 44_Y 1.38 0.00
99_F 44_Y 1.34 0.00
329_Y 43_A 1.28 0.00
238_S 50_V 1.13 0.00
441_V 285_K 1.03 0.00
296_E 95_F 0.98 0.00
91_C 41_D 0.94 0.00
99_F 47_V 0.91 0.00
76_M 35_S 0.89 0.00
206_F 123_M 0.89 0.00
209_S 273_P 0.89 0.00
18_K 353_N 0.86 0.00
370_Y 120_R 0.86 0.00
265_K 61_R 0.85 0.00
376_K 272_E 0.83 0.00
68_D 350_E 0.83 0.00
339_L 89_A 0.81 0.00
173_S 382_S 0.81 0.00
61_L 437_K 0.80 0.00
370_Y 96_D 0.80 0.00
368_S 225_E 0.79 0.00
312_I 157_I 0.79 0.00
265_K 106_D 0.78 0.00
265_K 104_Y 0.78 0.00
62_Q 53_K 0.77 0.00
204_V 422_V 0.77 0.00
341_E 455_S 0.77 0.00
413_E 61_R 0.75 0.00
26_V 292_I 0.75 0.00
236_N 40_I 0.75 0.00
250_S 290_Q 0.74 0.00
238_S 276_V 0.74 0.00
346_S 306_E 0.74 0.00
441_V 178_G 0.74 0.00
7_S 241_I 0.73 0.00
48_K 123_M 0.73 0.00
370_Y 95_F 0.73 0.00
229_A 285_K 0.73 0.00
31_D 356_Q 0.72 0.00
319_S 455_S 0.72 0.00
346_S 204_K 0.72 0.00
379_Q 82_F 0.72 0.00
294_V 325_D 0.71 0.00
131_G 275_I 0.71 0.00
322_S 421_F 0.71 0.00
82_I 248_F 0.71 0.00
473_E 138_L 0.71 0.00
375_Y 295_L 0.71 0.00
370_Y 93_S 0.71 0.00
260_K 18_D 0.71 0.00
365_A 197_L 0.70 0.00
250_S 361_D 0.70 0.00
117_V 290_Q 0.70 0.00
411_L 283_A 0.70 0.00
368_S 418_L 0.70 0.00
137_Y 137_S 0.70 0.00
101_P 413_S 0.70 0.00
468_V 31_A 0.70 0.00
86_G 90_Y 0.70 0.00
91_C 25_S 0.70 0.00
466_Y 86_N 0.69 0.00
473_E 404_M 0.69 0.00
197_R 141_L 0.69 0.00
116_A 285_K 0.69 0.00
14_L 53_K 0.69 0.00
10_N 69_E 0.69 0.00
401_G 185_E 0.69 0.00
394_E 329_S 0.69 0.00
356_K 13_V 0.69 0.00
433_L 76_F 0.69 0.00
78_I 328_E 0.68 0.00
64_K 427_D 0.68 0.00
438_G 419_L 0.68 0.00
370_Y 50_V 0.68 0.00
204_V 224_L 0.68 0.00
8_V 89_A 0.68 0.00
328_R 42_L 0.68 0.00
47_D 447_L 0.68 0.00
399_V 137_S 0.68 0.00
177_G 274_D 0.68 0.00
404_A 322_E 0.68 0.00
23_S 305_N 0.68 0.00
102_I 88_K 0.67 0.00
423_A 422_V 0.67 0.00
439_I 426_L 0.67 0.00
88_E 454_A 0.67 0.00
315_S 205_F 0.67 0.00
179_I 273_P 0.67 0.00
189_V 66_L 0.67 0.00
17_D 422_V 0.67 0.00
464_T 66_L 0.67 0.00
112_H 204_K 0.67 0.00
118_L 146_T 0.66 0.00
226_V 169_K 0.66 0.00
217_T 9_L 0.66 0.00
101_P 58_W 0.66 0.00
135_T 440_K 0.66 0.00
322_S 415_E 0.66 0.00
241_A 177_T 0.66 0.00
429_T 276_V 0.66 0.00
173_S 178_G 0.66 0.00
60_E 420_K 0.65 0.00
81_N 38_N 0.65 0.00
314_S 247_R 0.65 0.00
365_A 96_D 0.65 0.00
315_S 127_A 0.65 0.00
284_V 104_Y 0.65 0.00
21_K 292_I 0.65 0.00
94_K 287_R 0.65 0.00
233_A 426_L 0.65 0.00
278_E 290_Q 0.65 0.00
52_I 422_V 0.65 0.00
64_K 301_A 0.65 0.00
396_Y 13_V 0.65 0.00
265_K 70_I 0.65 0.00
443_C 118_I 0.65 0.00
138_F 304_V 0.65 0.00
304_F 139_V 0.65 0.00
449_R 425_A 0.65 0.00
25_V 2_H 0.64 0.00
85_N 233_E 0.64 0.00
346_S 272_E 0.64 0.00
43_F 193_A 0.64 0.00
91_C 23_S 0.64 0.00
238_S 275_I 0.64 0.00
376_K 474_K 0.64 0.00
368_S 25_S 0.64 0.00
69_G 470_Q 0.64 0.00
219_N 186_E 0.64 0.00
285_E 289_R 0.64 0.00
451_I 283_A 0.64 0.00
26_V 64_M 0.64 0.00
42_S 106_D 0.64 0.00
31_D 105_I 0.64 0.00
373_A 93_S 0.64 0.00
436_L 276_V 0.64 0.00
49_E 365_T 0.64 0.00
391_K 241_I 0.64 0.00
149_A 395_A 0.64 0.00
34_E 332_E 0.63 0.00
6_E 367_E 0.63 0.00
64_K 367_E 0.63 0.00
411_L 305_N 0.63 0.00
464_T 179_V 0.63 0.00
279_A 205_F 0.63 0.00
27_K 105_I 0.63 0.00
287_L 56_V 0.63 0.00
53_K 329_S 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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