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OPENSEQ.org

2Y69_B - 2Y69_C
PDB: 2Y69 Query Sequences:

Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 486
Sequences: 1408
Seq/Len: 2.91
I_Prob: 0.22
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_M 210_S 1.28 0.22
123_I 214_I 1.14 0.15
160_L 259_S 1.11 0.14
89_E 101_H 1.06 0.12
89_E 106_P 1.04 0.11
19_E 127_V 1.02 0.10
4_P 226_T 1.01 0.10
75_L 101_H 1.00 0.10
217_K 43_I 0.98 0.09
37_L 163_I 0.97 0.09
157_E 100_Y 0.97 0.09
210_V 233_F 0.97 0.09
73_L 101_H 0.96 0.08
211_L 3_T 0.94 0.08
72_I 5_A 0.94 0.08
30_I 101_H 0.93 0.08
156_S 90_L 0.93 0.07
12_A 21_S 0.91 0.07
76_I 4_H 0.91 0.07
160_L 11_P 0.90 0.07
12_A 117_T 0.89 0.07
44_L 41_L 0.89 0.07
154_V 142_I 0.89 0.06
73_L 102_S 0.87 0.06
221_K 60_I 0.87 0.06
160_L 220_Q 0.87 0.06
100_M 157_M 0.87 0.06
146_M 228_N 0.86 0.06
144_L 125_L 0.85 0.06
8_G 22_A 0.85 0.06
156_S 27_S 0.85 0.06
97_V 153_D 0.85 0.06
76_I 99_F 0.85 0.05
156_S 220_Q 0.84 0.05
68_L 149_L 0.84 0.05
110_Y 123_N 0.84 0.05
54_S 48_N 0.84 0.05
43_S 25_M 0.82 0.05
140_N 20_L 0.82 0.05
156_S 152_G 0.82 0.05
188_R 6_Y 0.82 0.05
39_L 74_Q 0.82 0.05
5_M 149_L 0.82 0.05
217_K 193_S 0.81 0.05
126_S 120_H 0.81 0.05
86_M 125_L 0.80 0.05
225_S 215_V 0.79 0.04
46_L 160_A 0.79 0.04
68_L 50_L 0.79 0.04
155_S 86_I 0.79 0.04
11_D 148_S 0.79 0.04
39_L 79_Y 0.79 0.04
63_T 133_S 0.79 0.04
215_P 163_I 0.79 0.04
147_E 211_T 0.79 0.04
117_S 166_T 0.79 0.04
143_V 53_Y 0.79 0.04
202_S 137_A 0.78 0.04
125_T 158_L 0.78 0.04
156_S 157_M 0.78 0.04
154_V 21_S 0.78 0.04
74_I 19_A 0.78 0.04
169_G 139_G 0.78 0.04
224_A 222_K 0.78 0.04
188_R 193_S 0.77 0.04
46_L 151_E 0.77 0.04
217_K 173_L 0.77 0.04
147_E 228_N 0.77 0.04
160_L 31_M 0.77 0.04
224_A 45_L 0.77 0.04
18_E 248_L 0.77 0.04
144_L 59_V 0.77 0.04
144_L 63_S 0.76 0.04
119_D 43_I 0.76 0.04
160_L 223_F 0.76 0.04
80_S 97_W 0.76 0.04
154_V 180_Y 0.75 0.04
98_K 248_L 0.75 0.04
144_L 197_V 0.75 0.04
206_F 174_L 0.75 0.04
217_K 162_F 0.75 0.04
46_L 252_V 0.75 0.04
71_I 86_I 0.75 0.04
160_L 121_P 0.74 0.04
46_L 47_T 0.74 0.04
167_S 193_S 0.74 0.04
134_R 13_P 0.74 0.04
163_W 170_Y 0.74 0.04
133_L 90_L 0.74 0.04
28_L 90_L 0.73 0.03
20_L 99_F 0.73 0.03
57_D 90_L 0.73 0.03
117_S 53_Y 0.73 0.03
163_W 95_F 0.73 0.03
131_G 122_L 0.72 0.03
172_T 63_S 0.72 0.03
224_A 40_L 0.72 0.03
170_L 25_M 0.72 0.03
189_P 49_M 0.72 0.03
3_Y 173_L 0.71 0.03
167_S 145_A 0.71 0.03
147_E 126_E 0.71 0.03
7_L 210_S 0.71 0.03
217_K 169_V 0.71 0.03
98_K 136_L 0.71 0.03
78_L 150_M 0.71 0.03
142_V 253_S 0.71 0.03
203_N 95_F 0.71 0.03
29_M 126_E 0.71 0.03
225_S 119_I 0.70 0.03
32_F 6_Y 0.70 0.03
214_V 49_M 0.70 0.03
9_F 50_L 0.70 0.03
78_L 60_I 0.70 0.03
213_L 163_I 0.70 0.03
218_Y 46_T 0.70 0.03
75_L 112_G 0.70 0.03
175_I 25_M 0.70 0.03
189_P 50_L 0.70 0.03
87_M 31_M 0.70 0.03
223_S 221_L 0.70 0.03
125_T 217_F 0.70 0.03
31_V 249_F 0.69 0.03
148_M 142_I 0.69 0.03
67_I 190_V 0.69 0.03
179_L 257_W 0.69 0.03
132_E 158_L 0.69 0.03
141_R 161_L 0.69 0.03
16_I 237_A 0.69 0.03
13_T 31_M 0.69 0.03
211_L 177_S 0.69 0.03
216_L 248_L 0.69 0.03
123_I 41_L 0.69 0.03
91_N 153_D 0.69 0.03
12_A 31_M 0.69 0.03
85_Y 57_R 0.68 0.03
6_Q 11_P 0.68 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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