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OPENSEQ.org
2WDQ_C - 2WDQ_D
PDB: 2WDQ Query Sequences:

 Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 244
Sequences: 221
Seq/Len: 0.91
I_Prob: 0.87
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
35_V 79_V 2.16 0.87
24_A 78_Q 1.78 0.66
87_V 19_V 1.63 0.53
45_L 111_V 1.62 0.52
51_S 48_W 1.52 0.44
20_F 78_Q 1.52 0.43
71_K 61_T 1.31 0.25
25_I 84_V 1.30 0.24
49_G 107_Y 1.27 0.22
92_M 72_A 1.26 0.22
63_A 99_V 1.26 0.22
56_E 63_L 1.26 0.21
127_L 22_T 1.25 0.21
79_T 77_W 1.24 0.20
83_Y 77_W 1.22 0.19
46_W 111_V 1.22 0.19
76_G 21_A 1.19 0.17
45_L 16_F 1.17 0.16
85_V 26_L 1.17 0.16
72_F 14_H 1.15 0.15
41_V 69_L 1.14 0.14
64_I 111_V 1.13 0.14
46_W 89_L 1.11 0.13
123_L 67_S 1.11 0.13
101_E 77_W 1.11 0.13
106_G 65_L 1.11 0.13
68_F 41_G 1.10 0.12
17_T 21_A 1.09 0.12
85_V 27_T 1.08 0.11
71_K 52_F 1.08 0.11
125_G 1_M 1.08 0.11
63_A 40_S 1.07 0.11
55_P 63_L 1.06 0.11
63_A 39_T 1.06 0.11
96_F 74_I 1.06 0.11
114_F 41_G 1.06 0.10
93_M 16_F 1.05 0.10
69_F 70_I 1.05 0.10
83_Y 81_T 1.04 0.10
37_T 28_L 1.03 0.09
26_A 7_A 1.02 0.09
32_V 39_T 1.02 0.09
89_I 31_I 1.02 0.09
4_N 67_S 1.01 0.08
85_V 30_I 1.00 0.08
61_A 6_S 1.00 0.08
47_L 21_A 0.99 0.08
91_H 77_W 0.99 0.08
42_G 91_L 0.98 0.08
11_V 114_G 0.96 0.07
48_L 53_A 0.96 0.07
78_L 60_F 0.96 0.07
116_I 59_V 0.96 0.07
113_S 72_A 0.96 0.07
106_G 69_L 0.96 0.07
79_T 81_T 0.95 0.07
49_G 105_V 0.95 0.07
92_M 26_L 0.95 0.07
121_S 22_T 0.95 0.07
49_G 16_F 0.95 0.07
104_E 112_V 0.95 0.07
112_I 50_G 0.95 0.07
73_I 60_F 0.94 0.06
79_T 78_Q 0.94 0.06
48_L 45_Y 0.94 0.06
4_N 39_T 0.93 0.06
81_L 30_I 0.93 0.06
37_T 58_K 0.92 0.06
61_A 102_V 0.92 0.06
12_N 94_Q 0.92 0.06
20_F 97_I 0.92 0.06
119_V 17_I 0.92 0.06
100_E 14_H 0.92 0.06
69_F 63_L 0.91 0.06
68_F 58_K 0.91 0.06
72_F 74_I 0.91 0.06
19_R 103_V 0.91 0.06
107_K 19_V 0.91 0.06
15_L 66_F 0.91 0.05
105_A 13_V 0.90 0.05
53_S 28_L 0.90 0.05
8_Q 76_M 0.90 0.05
40_A 106_I 0.90 0.05
96_F 87_L 0.89 0.05
48_L 73_W 0.89 0.05
53_S 17_I 0.89 0.05
77_I 9_G 0.89 0.05
73_I 58_K 0.89 0.05
33_S 33_M 0.88 0.05
73_I 67_S 0.88 0.05
97_G 81_T 0.88 0.05
75_W 77_W 0.87 0.05
129_W 104_Y 0.87 0.05
24_A 79_V 0.87 0.05
55_P 67_S 0.87 0.05
90_R 26_L 0.87 0.05
111_K 53_A 0.87 0.04
112_I 105_V 0.87 0.04
60_Q 45_Y 0.87 0.04
76_G 111_V 0.86 0.04
122_L 39_T 0.86 0.04
58_F 109_F 0.86 0.04
32_V 86_P 0.86 0.04
114_F 93_L 0.86 0.04
104_E 92_M 0.86 0.04
22_I 32_Y 0.86 0.04
115_V 96_V 0.85 0.04
37_T 57_T 0.85 0.04
108_R 53_A 0.85 0.04
123_L 92_M 0.85 0.04
50_T 76_M 0.85 0.04
75_W 81_T 0.85 0.04
59_E 63_L 0.85 0.04
50_T 111_V 0.84 0.04
101_E 5_A 0.84 0.04
125_G 52_F 0.84 0.04
112_I 60_F 0.84 0.04
39_V 103_V 0.84 0.04
36_I 108_G 0.84 0.04
58_F 79_V 0.84 0.04
55_P 56_F 0.84 0.04
110_A 58_K 0.84 0.04
117_T 11_N 0.83 0.04
108_R 87_L 0.83 0.04
42_G 14_H 0.83 0.04
115_V 38_A 0.83 0.04
25_I 103_V 0.83 0.04
12_N 77_W 0.83 0.04
127_L 51_F 0.83 0.04
66_G 41_G 0.83 0.04
70_V 13_V 0.83 0.04
94_M 108_G 0.82 0.04
128_V 101_L 0.82 0.04
59_E 66_F 0.82 0.04
33_S 93_L 0.82 0.04
90_R 69_L 0.82 0.04
22_I 27_T 0.82 0.04
45_L 113_W 0.82 0.04
125_G 43_L 0.82 0.04
8_Q 88_A 0.82 0.04
14_D 114_G 0.82 0.04
55_P 34_V 0.81 0.04
101_E 81_T 0.81 0.04
53_S 111_V 0.81 0.04
14_D 39_T 0.81 0.04
113_S 87_L 0.81 0.04
36_I 40_S 0.81 0.03
67_S 96_V 0.81 0.03
96_F 66_F 0.81 0.03
53_S 74_I 0.81 0.03
38_F 97_I 0.81 0.03
15_L 45_Y 0.81 0.03
115_V 46_E 0.81 0.03
16_Q 72_A 0.80 0.03
85_V 32_Y 0.80 0.03
110_A 48_W 0.80 0.03
54_S 104_Y 0.80 0.03
129_W 34_V 0.80 0.03
19_R 30_I 0.80 0.03
109_S 69_L 0.80 0.03
13_L 114_G 0.79 0.03
99_L 62_L 0.79 0.03
125_G 2_V 0.79 0.03
33_S 27_T 0.79 0.03
61_A 101_L 0.79 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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