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OPENSEQ.org
1QOP_A - 1QOP_B
PDB: 1QOP Query Sequences:

 Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 657
Sequences: 1155
Seq/Len: 1.78
I_Prob: 0.99
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_L 173_L 2.43 0.99
108_N 274_R 2.35 0.99
103_A 277_I 1.75 0.91
107_F 282_K 1.47 0.78
77_T 290_D 1.46 0.77
134_E 21_M 1.44 0.76
79_A 290_D 1.40 0.72
65_Q 171_E 1.28 0.62
135_E 7_Y 1.24 0.57
157_N 19_I 1.19 0.51
58_L 17_P 1.17 0.50
107_F 277_I 1.15 0.47
78_P 290_D 1.13 0.45
180_S 181_E 1.12 0.45
54_F 293_I 1.04 0.35
58_L 196_Y 0.95 0.26
214_I 138_V 0.94 0.25
33_S 59_T 0.87 0.19
85_L 47_L 0.85 0.17
137_A 5_N 0.84 0.17
215_S 339_C 0.83 0.16
19_F 196_Y 0.82 0.15
195_H 98_K 0.81 0.14
22_F 332_L 0.80 0.14
169_Y 257_G 0.80 0.14
80_Q 290_D 0.79 0.13
159_D 22_P 0.79 0.13
79_A 289_A 0.78 0.13
134_E 25_N 0.78 0.12
79_A 373_V 0.77 0.12
55_S 316_N 0.77 0.12
43_A 313_A 0.76 0.12
232_I 17_P 0.75 0.11
8_F 212_K 0.74 0.10
157_N 180_Y 0.74 0.10
180_S 84_A 0.74 0.10
31_E 299_I 0.73 0.10
219_Q 206_M 0.73 0.10
54_F 282_K 0.73 0.10
210_Q 63_N 0.72 0.09
180_S 19_I 0.72 0.09
182_V 122_S 0.72 0.09
143_A 90_V 0.71 0.09
117_R 286_M 0.71 0.09
4_Y 131_I 0.71 0.09
215_S 23_A 0.71 0.09
48_L 62_Q 0.71 0.09
178_S 106_I 0.69 0.08
166_V 138_V 0.68 0.08
33_S 72_L 0.68 0.07
65_Q 174_R 0.68 0.07
166_V 33_S 0.67 0.07
21_P 48_L 0.67 0.07
224_V 82_G 0.67 0.07
92_H 189_T 0.67 0.07
199_K 122_S 0.67 0.07
87_L 212_K 0.66 0.07
28_P 24_L 0.66 0.07
218_E 29_E 0.66 0.07
193_L 253_G 0.66 0.07
19_F 350_S 0.65 0.06
48_L 368_E 0.65 0.06
162_L 89_Q 0.65 0.06
217_P 257_G 0.65 0.06
133_V 277_I 0.65 0.06
116_A 42_A 0.64 0.06
229_A 311_Q 0.64 0.06
59_A 84_A 0.64 0.06
129_A 281_M 0.64 0.06
215_S 17_P 0.64 0.06
178_S 84_A 0.64 0.06
43_A 131_I 0.64 0.06
243_K 29_E 0.63 0.06
46_D 51_Y 0.63 0.06
222_A 27_L 0.63 0.06
82_F 49_K 0.63 0.06
72_F 288_T 0.63 0.06
195_H 250_G 0.63 0.06
250_Q 131_I 0.63 0.06
173_Y 125_L 0.63 0.06
86_A 39_E 0.62 0.06
47_A 5_N 0.62 0.06
231_A 94_A 0.62 0.06
77_T 131_I 0.62 0.05
152_F 203_F 0.62 0.05
129_A 296_S 0.62 0.05
21_P 356_H 0.61 0.05
107_F 281_M 0.61 0.05
123_V 132_Y 0.61 0.05
111_I 125_L 0.61 0.05
185_A 218_K 0.61 0.05
45_A 286_M 0.61 0.05
135_E 15_Y 0.61 0.05
243_K 45_A 0.61 0.05
163_L 127_L 0.61 0.05
9_A 66_A 0.61 0.05
180_S 180_Y 0.61 0.05
48_L 275_V 0.61 0.05
209_L 295_E 0.61 0.05
39_T 283_A 0.61 0.05
75_G 181_E 0.60 0.05
10_Q 250_G 0.60 0.05
174_T 340_R 0.60 0.05
214_I 142_S 0.60 0.05
67_A 11_F 0.59 0.05
43_A 340_R 0.59 0.05
134_E 14_M 0.59 0.05
58_L 278_Y 0.59 0.04
174_T 33_S 0.59 0.04
54_F 209_E 0.59 0.04
71_A 308_V 0.59 0.04
195_H 16_V 0.59 0.04
177_L 124_L 0.59 0.04
168_S 160_S 0.59 0.04
23_V 180_Y 0.59 0.04
158_A 142_S 0.59 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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